DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkr and Nmbr

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_036931.1 Gene:Nmbr / 25264 RGDID:3181 Length:390 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433
7tm_1 52..318 CDD:278431
PHA03216 467..>519 CDD:177558
NmbrNP_036931.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
7tm_GPCRs 44..335 CDD:421689
TM helix 1 45..71 CDD:410628
TM helix 2 78..104 CDD:410628
TM helix 3 116..146 CDD:410628
TM helix 4 158..178 CDD:410628
TM helix 5 209..234 CDD:410628
TM helix 6 259..289 CDD:410628
TM helix 7 303..328 CDD:410628
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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