DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkr and Pgr15l

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001028533.1 Gene:Pgr15l / 245526 MGIID:2676330 Length:456 Species:Mus musculus


Alignment Length:361 Identity:106/361 - (29%)
Similarity:171/361 - (47%) Gaps:54/361 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 AEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQFQAA 96
            |:||  |:..|..|.::::.||:||..|....::::..|.:.|.|||.:|::|.|...||.....
Mouse    71 AKIV--LTFAYAVIIVISLFGNSLVCQVFVKHKEIKKSTGLLIFNLAISDILIILLNSPFALARF 133

  Fly    97 LLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTKFVSKFIIGGIWMLA 161
            |...|.....||....|.|..|::||..||.|:|:||||.|::|::.|.|.....|::..||.:|
Mouse   134 LSGQWVFGRIMCHVSRFAQYCSLHVSTLTLMAVAMDRHRVILHPMKPRLTHSQCLFVVAMIWSIA 198

  Fly   162 LLFAVPFAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDDQLQSFRYTLVFVQ---------- 216
            :..|:|.||...:..|.....:       ||.:|         |.||....:.|.          
Mouse   199 VFLALPHAIYQNLFTLVNMDGD-------TRSYC---------LPSFPGPSILVSKYVDLGTFIL 247

  Fly   217 -YLVPFCVISFVYIQMAVRLWGTRAPGNAQDSRDITLLKNKKKVIKMLIIVVIIFGLCWLPLQLY 280
             |::|..||...|..:..|||...|.|:|...:.:...:.:||.|:|||::|::|.:||.||..|
Mouse   248 LYILPLLVIVVTYSHLGKRLWIQNAIGDASARQLMAHYQKRKKSIRMLILIVLVFAVCWFPLNFY 312

  Fly   281 NILYVTIPEINDYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNK----RFAACFCKFK 341
            .:|..:....||    |::::...|.|||::|||||||...|..|:.:...    |..:.|....
Mouse   313 VVLISSAGVEND----SVLFYAFHWFAMSSTCYNPFIYCWLNRSFRAKLRSISSFRMQSLFVCSN 373

  Fly   342 TSM------DAHERTFSMHTRASSIRSTYANSSMRI 371
            :.:      ::||           :|....:|.:|:
Mouse   374 SQVQQIKPQESHE-----------LRELQTSSLLRV 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 93/293 (32%)
7tm_1 52..318 CDD:278431 89/276 (32%)
PHA03216 467..>519 CDD:177558
Pgr15lNP_001028533.1 7tm_4 83..360 CDD:304433 93/296 (31%)
7tm_1 89..346 CDD:278431 89/276 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1254727at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X257
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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