DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkr and Tacr3

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_067357.1 Gene:Tacr3 / 21338 MGIID:892968 Length:452 Species:Mus musculus


Alignment Length:427 Identity:130/427 - (30%)
Similarity:208/427 - (48%) Gaps:43/427 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AEEEAEFERLYAAPAEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADV 82
            ::..|.....:..|:..:||.|:.||.:..|||.||.:|||::...::||||||.::.||||:|.
Mouse    55 SQVRANLTNQFVQPSWRIALWSLAYGLVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSDA 119

  Fly    83 IIGLFCIPFQFQAALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTK 147
            .:..|.....|...:...|......|.|..|....:|..|::::||||:||:.|||:||:.|.:.
Mouse   120 SVAAFNTLVNFIYGVHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKPRLSA 184

  Fly   148 FVSKFIIGGIWMLALLFAVPFAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDDQLQSFRYTL 212
            ..:|.:||.||:||.|.|.|..:..:::.:.            .|..|. ....:...|.|.|.:
Mouse   185 TATKIVIGSIWILAFLLAFPQCLYSKIKVMP------------GRTLCY-VQWPEGPKQHFTYHI 236

  Fly   213 VFV--QYLVPFCVISFVYIQMAVRLWGTRAPGNAQDSRDITLLKNKKKVIKMLIIVVIIFGLCWL 275
            :.:  .|..|..::...|..:.:.|||...||:..|... ..||.|:||:||:||||:.|.:|||
Mouse   237 IVIILVYCFPLLIMGVTYTIVGITLWGGEIPGDTCDKYH-EQLKAKRKVVKMMIIVVVTFAICWL 300

  Fly   276 PLQLYNILYVTIPEINDYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRFAAC-FCK 339
            |..:|.||.....::|.:.:|..|:....|||||::.|||.||...|::|:..|.:.|..| |.:
Mouse   301 PYHVYFILTAIYQQLNRWKYIQQVYLASFWLAMSSTMYNPIIYCCLNKRFRAGFKRAFRWCPFIQ 365

  Fly   340 FKTSMDAHERTFSMH-TRASSIRSTYANSSMRIRSNLFGPARGG-VNNGKPGLHMPRVHGSGANS 402
            ..:..:...:|...| ||.||:   |..|.|...:.|:.|:.|. ..:.:....:||        
Mouse   366 VSSYDELELKTTRFHPTRQSSL---YTVSRMESVTVLYDPSEGDPAKSSRKKRAVPR-------- 419

  Fly   403 GIYNGSSGQNNNVNG-QHHQHQSVVT---FAATPGVS 435
                     :.:.|| .|.:.:|..|   |.::|..|
Mouse   420 ---------DPSANGCSHREFKSASTTSSFISSPYTS 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 97/284 (34%)
7tm_1 52..318 CDD:278431 90/267 (34%)
PHA03216 467..>519 CDD:177558
Tacr3NP_067357.1 7tm_4 81..>204 CDD:304433 48/122 (39%)
7tm_1 89..343 CDD:278431 90/267 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..452 12/64 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X257
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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