DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lkr and tkr-3

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001343603.1 Gene:tkr-3 / 177285 WormBaseID:WBGene00006428 Length:400 Species:Caenorhabditis elegans


Alignment Length:334 Identity:111/334 - (33%)
Similarity:181/334 - (54%) Gaps:33/334 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PAEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQFQA 95
            |.|:: :..:.|..|:.:||:||.||:::.....::|::|..:|.||.|||:..|:|.|||:|||
 Worm    43 PVELI-IWCMLYAIIAFMAVVGNLLVLYITLFRLRVRSITTYFILNLGFADLFTGIFAIPFKFQA 106

  Fly    96 ALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTKFVSKFIIGGIWML 160
            ||.|.|.||..:|...|:|:.:::.||||||...|:...|.:.....::.:...:|..:..||::
 Worm   107 ALFQEWFLPRSLCRIVPYVETVALTVSVFTLVTSAVHEFRTMFFSKCSQMSPRSAKRCVLLIWIM 171

  Fly   161 ALLFAVPFAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDDQLQSFRYTLVFVQYLVPFCVIS 225
            |:|.::|..:...    |..|.::|.|..|.   |:.........:::...||.:||.||..::.
 Worm   172 AVLVSLPHGLFHN----TYEFPDDNNTSIVQ---CLPVYPDAGWWKTYNVYLVIIQYFVPMIILD 229

  Fly   226 FVYIQMAVRLWGTRAPGNAQDSR---DITLLKNKK--------------KVIKMLIIVVIIFGLC 273
            ..|..:||::|      :...||   |.|.:..:|              ::::.|||||..|.||
 Worm   230 TAYTMIAVKIW------SLSQSRVELDETKMATQKISVVSMVSPNTQLSQLMRTLIIVVACFSLC 288

  Fly   274 WLPLQLYNILYVTIPEINDYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRF--AAC 336
            |.||:.|.:|....||||.:.:|::|:|...||||||||.||.|||:||.|:..|:.:.|  ..|
 Worm   289 WFPLETYLLLNELKPEINGWKYINLVFFFSHWLAMSNSCLNPIIYGLYNTKYNEEYRRLFRQIGC 353

  Fly   337 FCKFKTSMD 345
            ..:.:.|:|
 Worm   354 IWQRQKSLD 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 102/299 (34%)
7tm_1 52..318 CDD:278431 94/282 (33%)
PHA03216 467..>519 CDD:177558
tkr-3NP_001343603.1 7tm_GPCRs 47..344 CDD:391938 104/310 (34%)
TM helix 1 48..74 CDD:341315 8/25 (32%)
TM helix 2 81..106 CDD:341315 13/24 (54%)
TM helix 3 119..149 CDD:341315 11/29 (38%)
TM helix 4 160..181 CDD:341315 6/20 (30%)
TM helix 5 209..238 CDD:341315 8/28 (29%)
TM helix 6 254..299 CDD:341315 13/44 (30%)
TM helix 7 312..337 CDD:341315 15/24 (63%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 166 1.000 Domainoid score I2353
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 193 1.000 Inparanoid score I2545
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1254727at2759
OrthoFinder 1 1.000 - - FOG0016813
OrthoInspector 1 1.000 - - oto17358
orthoMCL 1 0.900 - - OOG6_112774
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X257
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.870

Return to query results.
Submit another query.