DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkr and cckbra

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001108186.2 Gene:cckbra / 100137117 ZFINID:ZDB-GENE-060503-482 Length:444 Species:Danio rerio


Alignment Length:371 Identity:94/371 - (25%)
Similarity:169/371 - (45%) Gaps:82/371 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PAEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQFQA 95
            |.|:.::..|.|..:.:::|.||.|:|.|:...::||||||.::.:||.:|:::.:|||||....
Zfish    52 PKEMDSVRIILYSLVFLLSVFGNLLIIVVLIVNKRMRTVTNSFLLSLAVSDLMMAIFCIPFNLIP 116

  Fly    96 ALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRAR--PTKFVSKFIIGGIW 158
            :||:.:.....||....:...:||::|.|:|.||||:|:.||.|||::|  .|:..:..:|...|
Zfish   117 SLLEDFIFGAAMCKTVAYFMGISVSISTFSLVAIAIERYSAICNPLKSRAWQTRSHAYKVIAATW 181

  Fly   159 MLALLFAVPFAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDDQLQSFRYTLVFVQYLVPFCV 223
            :|::...||:.: |.:      ....|:|.|:|...|..:.......|::...|:.:.:.:|..|
Zfish   182 VLSVAIMVPYPV-FSI------LVPFNKTNNITAHMCRLEWPISQVEQTWYVLLLSILFFIPGVV 239

  Fly   224 ISFVYIQMAVRLW-GTRAPGNAQDSRDITLLKN-------------------------------- 255
            :...|..::..|: |.:.  ..:..:|.:.:||                                
Zfish   240 MIIAYGLISRELYRGIQF--ELEQKKDTSGVKNGLNGGLSSCHDESDGCYIQVSKKPPAMELSTL 302

  Fly   256 ----------------------KKKVIKMLIIVVIIFGLCWLPLQLYNILYVTIPEIN------- 291
                                  ||:||:||||:|.:|.:||:||...| .:....:|:       
Zfish   303 TTSGPVKTDRPRSNTSEAKLIAKKRVIRMLIIIVAMFFVCWMPLYSAN-TWKAFDQISAQRALSG 366

  Fly   292 -DYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRFAAC 336
             ...||.:       |:.:::|.||.||...|.:|::.....|..|
Zfish   367 APISFIQL-------LSYTSACVNPIIYCFMNTRFRKALLATFGCC 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 88/347 (25%)
7tm_1 52..318 CDD:278431 83/330 (25%)
PHA03216 467..>519 CDD:177558
cckbraNP_001108186.2 7tm_4 63..>253 CDD:304433 59/196 (30%)
7tm_1 73..387 CDD:278431 83/330 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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