DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkr and tacr1

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001106489.1 Gene:tacr1 / 100127678 XenbaseID:XB-GENE-5835469 Length:407 Species:Xenopus tropicalis


Alignment Length:396 Identity:121/396 - (30%)
Similarity:186/396 - (46%) Gaps:62/396 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 YAAPAEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQ 92
            :..||..:||.||.|..|.||:|:||.:|:|::...::||||||.::.|||||:..:..|.....
 Frog    25 FLQPAWQIALWSIAYSIIVIVSVVGNIIVMWIILAHKRMRTVTNYFLVNLAFAEASMSAFNTVIN 89

  Fly    93 FQAALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTKFVSKFIIGGI 157
            |..|:...|......|.|..|....:|..|::::||||:||:.|||:||:.|.:...::.:|..|
 Frog    90 FTYAIHNHWYYGLIYCKFHNFFPISAVFSSIYSMTAIALDRYMAIIHPLKPRLSATATRIVIAVI 154

  Fly   158 WMLALLFAVPFAIAFRVEELTER---FRENNETYNVTRPFCMNKNLSDDQLQSFRYTLVFVQYLV 219
            |..|...|.|......||...:|   :.|..|:.|  |.|       :...|...:.|:   |.:
 Frog   155 WGFAFALAFPQGYFATVEPTPDRVVCYMEWPESEN--RKF-------EKVYQVLLFGLI---YFL 207

  Fly   220 PFCVISFVYIQMAVRLWGTRAPGNAQDSRDITLLKNKKKVIKMLIIVVIIFGLCWLPLQLYNILY 284
            |..||...|..:.:.||.:..||::.| |....:..|:||:||:|:||..|.:||||..:|.:|.
 Frog   208 PLLVIGCSYTFIGMTLWASEIPGDSSD-RYHEQVVAKRKVVKMMIVVVCTFAICWLPYHIYFLLQ 271

  Fly   285 VTIPEINDYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRFAAC------------- 336
            :.:|: ....|...::....||.||::.|||.||...|::|:..|...|..|             
 Frog   272 LFLPD-ESQKFYQQLYLGIMWLGMSSTMYNPIIYCCLNDRFRIGFKHVFRWCPFIHAGEYEGLEM 335

  Fly   337 ----FCKFKTSM-------------------DAHERTFSMH------TRASSIRS---TYANSSM 369
                :.:.::||                   ||.|.|.|..      |...|.||   |.::||.
 Frog   336 KSTRYLQTQSSMYKISRIETTVSSVLSANDEDAEETTKSSKRLSLDLTSNGSSRSVCKTMSDSSS 400

  Fly   370 RIRSNL 375
            ...:||
 Frog   401 FYSNNL 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 94/285 (33%)
7tm_1 52..318 CDD:278431 87/268 (32%)
PHA03216 467..>519 CDD:177558
tacr1NP_001106489.1 7tmA_NK1R 33..315 CDD:320668 100/295 (34%)
TM helix 1 34..60 CDD:320668 12/25 (48%)
TM helix 2 67..93 CDD:320668 9/25 (36%)
TM helix 3 105..135 CDD:320668 12/29 (41%)
TM helix 4 146..167 CDD:320668 6/20 (30%)
TM helix 5 193..222 CDD:320668 7/31 (23%)
TM helix 6 241..271 CDD:320668 14/29 (48%)
TM helix 7 283..308 CDD:320668 9/24 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X257
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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