DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lkr and si:dkey-202l22.3

DIOPT Version :10

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001108620.1 Gene:si:dkey-202l22.3 / 100002553 ZFINID:ZDB-GENE-131127-471 Length:377 Species:Danio rerio


Alignment Length:308 Identity:90/308 - (29%)
Similarity:151/308 - (49%) Gaps:31/308 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 YGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIP----FQFQAALLQSWN 102
            |..:.:||.:||:.::..:...:::...||.:|.|||..|:::.|.|:|    :.|.|   |.|.
Zfish    45 YALVVVVAGVGNSFLLACILADKKLHNATNFFIGNLAAGDLLMCLSCVPLTASYAFDA---QGWA 106

  Fly   103 LPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTKFVSKFIIGGIWMLALLFAVP 167
            ....||...|.||..:|..||.:|||||:||:..:..|:|.|.:.:....:..|:|.::|..|.|
Zfish   107 FGRPMCHLIPLVQGATVFASVLSLTAIAMDRYVVVAYPVRRRISVWGCGAVALGVWAVSLALAAP 171

  Fly   168 FAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDD-----QLQSFRYTLVFV--QYLVPFCVIS 225
            .::..|..:|              ||..|...:.::     :.|...|:..|:  .|::|...:|
Zfish   172 PSLHTRYVDL--------------RPSGMELVVCEEFWLGAERQRLLYSCFFLLASYMIPLLSVS 222

  Fly   226 FVYIQMAVRLWGTRAPGNAQDSRDITLLKNKKKVIKMLIIVVIIFGLCWLPLQLYNILYVTIP-- 288
            ..|..::|.|.....||....|:. ...|.::|...:|:..|:.|.|||||||:.|:|.....  
Zfish   223 ISYCAISVHLRKHTLPGEPSQSQQ-RWSKQRRKTFSLLVASVLAFALCWLPLQVLNLLLDLDSDF 286

  Fly   289 EINDYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRFAAC 336
            :|.|.|:::::...|..:|||::|||||||...:.|.:......|..|
Zfish   287 QIVDKHYVNVLQVSCHLIAMSSACYNPFIYASLHSKVRMHLRGYFCPC 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tmA_leucokinin-like 36..329 CDD:320515 88/299 (29%)
TM helix 1 37..63 CDD:320515 5/20 (25%)
TM helix 2 70..95 CDD:320515 11/28 (39%)
TM helix 3 108..138 CDD:320515 14/29 (48%)
TM helix 4 149..170 CDD:320515 5/20 (25%)
TM helix 5 205..234 CDD:320515 7/30 (23%)
TM helix 6 254..284 CDD:320515 13/29 (45%)
TM helix 7 297..322 CDD:320515 11/24 (46%)
si:dkey-202l22.3NP_001108620.1 7tm_GPCRs 39..327 CDD:475119 88/299 (29%)
TM helix 1 41..65 CDD:410628 5/19 (26%)
TM helix 2 74..96 CDD:410628 9/21 (43%)
TM helix 3 113..135 CDD:410628 10/21 (48%)
TM helix 4 156..172 CDD:410628 4/15 (27%)
TM helix 5 203..226 CDD:410628 5/22 (23%)
TM helix 6 256..278 CDD:410628 10/21 (48%)
TM helix 7 295..320 CDD:410628 11/24 (46%)

Return to query results.
Submit another query.