Protein Alignment blanks and Stau1

DIOPT Version :9

• Sequence 1: NP_647966.1
• Gene: blanks / 38620
• FlyBaseID: FBgn0035608
• Length: 324
• Species: Drosophila melanogaster
• Sequence 2: NP_445888.1
• Gene: Stau1 / 84496
• RGDID: 621778
• Length: 495
• Species: Rattus norvegicus
• Alignment Length: 295
• Identity: 62/295 - (21%)
• Similarity: 112/295 - (37%)
• Gaps: 80/295 - (27%)

  Fly    47 AMGGENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRKKQKKN-KKAKI 110
            ::||: :.:.||.:  .|....|....::|..:::...::..       .|||:.:::| .|::|
  Rat    44 SVGGQ-QFNGKGKM--RPPVKHDATARALRTLQSEPLPERLE-------VNGRESEEENLNKSEI 98

  Fly   111 RPLTMPVTSKDALMVLNELKGVTVDNMQIKRD----HEGKIMARVVVNSKKYEAEGSSVN-SARN 170
            ..: ..:..|..|.|..|...:|    |:.|:    |....:.||.|.....|.||.|.. |.:|
  Rat    99 SQV-FEIALKRNLPVNFESFPLT----QVARESGPPHMKNFVTRVSVGEFVGEGEGKSKKISKKN 158

  Fly   171 AACEKALQEILTTKMKAVLD-----GPGKSLESDEDDILEKMASYAIHKLGEEWKTDDIDVATLY 230
            ||             :|||:     .|..::|..:..|.:|  |....||
  Rat   159 AA-------------RAVLEQLRRLPPLPAVERVKPRIKKK--SQPTCKL--------------- 193

  Fly   231 NDLKNKQTSVVEPKKPLPETWKNMHPCMVLNYMR-------PQCTFIVSGGTGTNQNNTFSMSVC 288
                  ||:        |:..:.|:|...|..::       |:  :::....|..:...|.|.|.
  Rat   194 ------QTA--------PDYGQGMNPISRLAQIQQAKKEKEPE--YMLLTERGLPRRREFVMQVK 242

  Fly   289 VDNCEFNAEGPSKKAARYKLSALVCNKLFGTDYPQ 323
            |.:......|.:||.|: :.:|....::.|...||
  Rat   243 VGHHTAEGAGTNKKVAK-RNAAENMLEILGFKVPQ 276

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
blanks	NP_647966.1	None
Stau1	NP_445888.1	DSRM_SF	1..70	CDD:412133	6/28 (21%)
		DSRM_SF	95..167	CDD:412133	24/89 (27%)
		DSRM_STAU1_rpt4	194..279	CDD:380714	20/94 (21%)
		Staufen_C	366..475	CDD:374568

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166352095
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.930