DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blanks and tarbp2

DIOPT Version :10

Sequence 1:NP_647966.1 Gene:blanks / 38620 FlyBaseID:FBgn0035608 Length:324 Species:Drosophila melanogaster
Sequence 2:XP_012812551.1 Gene:tarbp2 / 595034 XenbaseID:XB-GENE-491800 Length:361 Species:Xenopus tropicalis


Alignment Length:64 Identity:20/64 - (31%)
Similarity:29/64 - (45%) Gaps:8/64 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 PQCTFIVSGGTGTNQNNTFSMSV----CVDNC----EFNAEGPSKKAARYKLSALVCNKLFGTD 320
            |....:.:.|.....|.||.:||    |...|    ....:|||||||::|.:.:..:.|.|.|
 Frog    45 PVYDLLKAEGQAHQPNFTFRVSVGDINCTGQCSAPPSTRGQGPSKKAAKHKAAEVALSLLKGGD 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blanksNP_647966.1 DSRM_SF 120..180 CDD:444671
DSRM_SF 254..314 CDD:444671 17/56 (30%)
tarbp2XP_012812551.1 DSRM_TARBP2_rpt1 26..107 CDD:380719 18/61 (30%)
DSRM_TARBP2_rpt2 160..226 CDD:380681
DSRM_TARBP2_rpt3 287..358 CDD:380722
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.