DRSC/TRiP Functional Genomics Resources

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Protein Alignment blanks and stau1

DIOPT Version :10

Sequence 1:NP_647966.1 Gene:blanks / 38620 FlyBaseID:FBgn0035608 Length:324 Species:Drosophila melanogaster
Sequence 2:XP_012827226.2 Gene:stau1 / 549296 XenbaseID:XB-GENE-920408 Length:719 Species:Xenopus tropicalis


Alignment Length:338 Identity:64/338 - (18%)
Similarity:121/338 - (35%) Gaps:82/338 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LEMKKALIPN-PSAEEDAVAVI------PLADNLKKTAMGGENKSDEKGTVSSEPKALSDQITSS 74
            :::..:.:|| |:|......::      ||...|...:......|:..|.........|..:|||
 Frog     1 MDVNMSQVPNSPAATLSGSQILNKNQHSPLPQPLSIPSTASPLPSENAGRPLQNSALPSPSVTSS 65

  Fly    75 MRVTKNKIADDKSSDVITDDATNGRKKQKK---NKKA---KIRPLTM------PVTSKDALMVLN 127
                        |...::.:..|.::|...   |:.|   ||:|:..      |..||...:   
 Frog    66 ------------SPAAVSSNMANPKEKTPMCLVNELARFNKIQPVYKLLSEQGPAHSKVIPL--- 115

  Fly   128 ELKGVTVDNMQIKRDHEGK----IMARVVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAV 188
               |...|...::|..|.:    ...::.:..:.:||||:|:..|::||..|||:   .||....
 Frog   116 ---GRWQDYSLLERVGEDRPRQMFTVQLTLGDQYWEAEGTSIKKAQHAAAAKALE---GTKYPKP 174

  Fly   189 LDGPGKSLESDEDDILEKMASYAI-HKLGEEWKTDDID----VATLYNDLKNKQTSVVEPK--KP 246
            ...|.:......|.|...:...|: .|||.:.....:|    :.:.||  .|.:.....|:  .|
 Frog   175 TVRPVRGERKYPDSITPTVELNALCMKLGRKPTYKPLDPYTGIRSAYN--YNMRGGGYPPRYFYP 237

  Fly   247 LPETWKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPSKKAARYKLSAL 311
            .|     :.|.:                        :.:.:.:...:|:.:|.:::||::..:|.
 Frog   238 FP-----VAPIL------------------------YQVELSIGGQQFHGKGRTRQAAKHDAAAK 273

  Fly   312 VCNKLFGTDYPQK 324
            ....|.....|.|
 Frog   274 ALKSLQHEPLPDK 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blanksNP_647966.1 DSRM_SF 120..180 CDD:444671 16/63 (25%)
DSRM_SF 254..314 CDD:444671 6/59 (10%)
stau1XP_012827226.2 DSRM_SF 78..154 CDD:444671 17/81 (21%)
DSRM_STAU1_rpt2 200..264 CDD:380710 13/94 (14%)
DSRM_STAU1_rpt3 301..367 CDD:380712
DSRM_STAU1_rpt4 394..474 CDD:380714
Staufen_C 565..675 CDD:465131
Blue background indicates that the domain is not in the aligned region.

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