DRSC/TRiP Functional Genomics Resources

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Protein Alignment blanks and stau2

DIOPT Version :10

Sequence 1:NP_647966.1 Gene:blanks / 38620 FlyBaseID:FBgn0035608 Length:324 Species:Drosophila melanogaster
Sequence 2:XP_021325790.1 Gene:stau2 / 393899 ZFINID:ZDB-GENE-040426-687 Length:684 Species:Danio rerio


Alignment Length:217 Identity:45/217 - (20%)
Similarity:87/217 - (40%) Gaps:48/217 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 KDALMVLNELKGVTVDNMQIKRDHE-----GKIM-ARVVVNSKKYEAEGSSVNSARNAACEKALQ 178
            |..:.::|||........|.|..:|     .||. .::.:.::.:|:||||:..|:::...|||.
Zfish    79 KTPMCLVNELARFNRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVWESEGSSIKKAQHSTATKALA 143

  Fly   179 EILTTKMKAVLDGPGKSLESDEDDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEP 243
            |      .::...|.:|.::|.:.....:             |..:::..|  .:|..:.::..|
Zfish   144 E------SSLPRPPPRSPKADSNSNPGSI-------------TPTVELNGL--AMKRGEPAIYRP 187

  Fly   244 --KKPLPETWKNMHPCMVLN----YMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPSKK 302
              .||:|....|.:...:.|    |..|:               .|.:.:.|.|.||..||.:::
Zfish   188 LDPKPIPNYRANYNFRGMFNQRYHYPVPK---------------VFYVQLTVGNNEFIGEGRTRQ 237

  Fly   303 AARYKLSALVCNKLFGTDYPQK 324
            |||:..:......|.....|::
Zfish   238 AARHNAAMKALQALKNEPIPER 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blanksNP_647966.1 DSRM_SF 120..180 CDD:444671 18/65 (28%)
DSRM_SF 254..314 CDD:444671 13/63 (21%)
stau2XP_021325790.1 DSRM_STAU2_rpt1 75..142 CDD:380709 16/62 (26%)
DSRM_STAU2_rpt2 170..251 CDD:380711 20/97 (21%)
DSRM_STAU2_rpt3 278..344 CDD:380713
DSRM_STAU2_rpt4 376..461 CDD:380715
Staufen_C 526..631 CDD:465131
Blue background indicates that the domain is not in the aligned region.

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