DRSC/TRiP Functional Genomics Resources

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Protein Alignment blanks and STAU2

DIOPT Version :10

Sequence 1:NP_647966.1 Gene:blanks / 38620 FlyBaseID:FBgn0035608 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_001157852.1 Gene:STAU2 / 27067 HGNCID:11371 Length:570 Species:Homo sapiens


Alignment Length:218 Identity:47/218 - (21%)
Similarity:79/218 - (36%) Gaps:50/218 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 KDALMVLNELKGVTVDNMQIK------RDHEGKIMARVVVNSKKYEAEGSSVNSARNAACEKALQ 178
            |.|:.::|||........|.|      ..|......::.:..:.:|:||||:..|:.|...|||.
Human     7 KTAMCLVNELARFNRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALT 71

  Fly   179 EILTTKMKAVLDGPGKSLESDEDDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEP 243
            |  :|..|.|...|..::.::...|                 |..:::..|  .:|..:.::..|
Human    72 E--STLPKPVQKPPKSNVNNNPGSI-----------------TPTVELNGL--AMKRGEPAIYRP 115

  Fly   244 KKPLPETWKNMHPCMVLNY-------MRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPSK 301
            ..|.|      .|....||       .|..|..          ...|.:.:.|.|.||..||.::
Human   116 LDPKP------FPNYRANYNFRGMYNQRYHCPV----------PKIFYVQLTVGNNEFFGEGKTR 164

  Fly   302 KAARYKLSALVCNKLFGTDYPQK 324
            :|||:..:......|.....|::
Human   165 QAARHNAAMKALQALQNEPIPER 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blanksNP_647966.1 DSRM_SF 120..180 CDD:444671 18/65 (28%)
DSRM_SF 254..314 CDD:444671 15/66 (23%)
STAU2NP_001157852.1 DSRM_SF 3..70 CDD:444671 16/62 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..94 5/24 (21%)
DSRM_STAU2_rpt2 98..179 CDD:380711 20/98 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..203 1/7 (14%)
DSRM_STAU2_rpt3 206..272 CDD:380713
Nuclear localization signal 1. /evidence=ECO:0000250 273..291
DSRM_STAU2_rpt4 304..389 CDD:380715
Nuclear localization signal 2. /evidence=ECO:0000250 373..412
Required for dendritic transport. /evidence=ECO:0000250 381..570
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..409
Staufen_C 461..523 CDD:465131
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 528..570
Blue background indicates that the domain is not in the aligned region.

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