DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blanks and adar

DIOPT Version :10

Sequence 1:NP_647966.1 Gene:blanks / 38620 FlyBaseID:FBgn0035608 Length:324 Species:Drosophila melanogaster
Sequence 2:XP_031746878.1 Gene:adar / 100493195 XenbaseID:XB-GENE-854473 Length:1218 Species:Xenopus tropicalis


Alignment Length:382 Identity:79/382 - (20%)
Similarity:125/382 - (32%) Gaps:91/382 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGGENKSDEKGTVSSEPKA 66
            |.|.||.:|.....:..:..|..|.||....:.:.    ......|.|......|..:|...|:.
 Frog   220 EGKGLLCKSLGTPPVWRVSSATHPPPSQSSGSSSY----QGSSSPAEGLSTSDSEDNSVPCSPEV 280

  Fly    67 LSDQITSSMRVTKNKIAD-----DKSSDVI------------TDDATNGRKKQKKNKKAKIRPLT 114
                    |...|.|:.|     ..|:..|            .....|..:||.:..|....|:.
 Frog   281 --------MAANKEKVCDFLYNSQPSTPFIIRKNVGIPKMPELTQILNALEKQGEACKVSSNPVK 337

  Fly   115 MPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMARVVVNSKKYEAEGSSVNSARNAACEKALQE 179
            ..:|.|....:|.:.:...:..|::|.  ||.        |:..|.|..:.....|.....::.|
 Frog   338 WTLTDKKRERMLIKKRAAEIHAMEVKL--EGV--------SEAKEPETPAERELENGQQAASMLE 392

  Fly   180 ILTTKMKAVLDGPGKSLESDE--------DDILEKMASYAIHKLGEE--------WKTDDIDVA- 227
            .:.|:: .|...||....:|:        ::...|.|     |.|.|        |.:|||..| 
 Frog   393 AVHTEL-PVGPVPGDGFIADQNVPPFEASEEPPRKRA-----KGGSEFDDFENGKWASDDIPEAM 451

  Fly   228 ---TLYN-----------DLKNKQTSVVEPKKPLPETWK-----NMHPCMVL----NYMRPQCTF 269
               ...|           ::.|:.|...||.|......|     ..:|...|    :|....|.|
 Frog   452 NAMNAMNQSDVLVGIPEAEIHNEFTQAYEPVKEFNRLEKLLACREKNPVSGLLEFTHYCSQHCDF 516

  Fly   270 IVSGGTGTNQNNTFSMSVCVDNCEFN-AEGPSKKAARYKLSALVCNKLF-----GTD 320
            ::...:|.:.:..|.:...:|...|. ||..|||.|:...:||....|.     ||:
 Frog   517 VLLNQSGPSHDPRFKIQAVIDGRSFPVAEASSKKTAKKDAAALALRILLREEQGGTE 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blanksNP_647966.1 DSRM_SF 120..180 CDD:444671 10/59 (17%)
DSRM_SF 254..314 CDD:444671 17/64 (27%)
adarXP_031746878.1 Zalpha 173..241 CDD:128823 5/20 (25%)
Zalpha 281..344 CDD:128823 12/62 (19%)
DSRM_SF 497..>548 CDD:444671 11/50 (22%)
DSRM_DRADA_rpt2 626..696 CDD:380743
DSRM_SF 743..813 CDD:444671
ADEAMc 833..1215 CDD:214718
Blue background indicates that the domain is not in the aligned region.

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