DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4835 and obst-F

DIOPT Version :10

Sequence 1:NP_647965.3 Gene:CG4835 / 38619 FlyBaseID:FBgn0035607 Length:1224 Species:Drosophila melanogaster
Sequence 2:NP_649186.1 Gene:obst-F / 40209 FlyBaseID:FBgn0036947 Length:326 Species:Drosophila melanogaster


Alignment Length:396 Identity:79/396 - (19%)
Similarity:116/396 - (29%) Gaps:141/396 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 SWDPPPA--PPGISDDYCRNKEDGSVHYYPYDCQAYINCTYGWPVLNYCIEDKVFNKYLGICDTP 232
            ||:.|..  ..|.....|..:::|.:..:|.||..|.:|: ..|.|.||.:...|::...|||.|
  Fly    26 SWELPKVRHTVGHLSHICLGRQEGDLVPHPLDCNGYFSCS-RVPTLLYCDQGLQFDENRAICDLP 89

  Fly   233 DMADCEELPLPTTTTEMPPTSTTEEDVVCGPTPEGIEEDYCVPKGNGFYEYPYNCSGYLACKNGC 297
            :..:|.  |:.|.|.|                                            ..||.
  Fly    90 ENTNCR--PVATGTVE--------------------------------------------SANGL 108

  Fly   298 TDLDYCQPDKLFNNWLHICDTPDSVRCDPLP-FPTTPGTTNKPTTPSVTTTPSITTTPSTPTTLP 361
            .|      :...|.|.|          .|.| |.....|:.:|..|.                  
  Fly   109 AD------NSELNWWPH----------KPKPVFVAVDVTSGQPVNPM------------------ 139

  Fly   362 SDGSTTEIHSSTTEEIVTTTDGLPSDVDPNDCKDEKDGTIF-AYIGNCSEYLICKDNQVQMGHCP 425
                                    ...||...:....|..| .:..||..|.||....:....|.
  Fly   140 ------------------------EKYDPEHIECRHYGAYFLPHPRNCGLYFICAYGHLHRHQCG 180

  Fly   426 PNTLFNPDLLVCDEPDDVVCLGDRTTTPIPTTIPTTTTEKTTPTTTTTTVATTLGPDQLCDGQEL 490
            ..|.:|.:...|...|..:|.|:...:...|.:.||....|..:....||...:|..:....|:.
  Fly   181 RGTAWNFEKSECQLSDQAICYGESQISEPHTDVETTMKVPTANSEGAVTVCYIVGSSEYTTLQQF 245

  Fly   491 GAS-------------------------------FSYPDDCSKYYLCLGGGQWTLAPCIYGSYFD 524
            ..|                               .|:|:||||||:|: ||...|..|..|.::|
  Fly   246 LTSPEITELPPVTPPSPPRAEANALTCPSTKQSYMSHPEDCSKYYICI-GGMPVLTSCPKGLFWD 309

  Fly   525 PSTGQC 530
            ..:|.|
  Fly   310 QKSGFC 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4835NP_647965.3 CBM_14 51..103 CDD:426342
CBM_14 185..237 CDD:426342 16/51 (31%)
CBM_14 273..322 CDD:426342 6/48 (13%)
CBM_14 393..444 CDD:426342 12/51 (24%)
CBM_14 485..539 CDD:426342 19/77 (25%)
CBM_14 585..638 CDD:426342
CBM_14 661..714 CDD:426342
CBM_14 744..796 CDD:426342
CBM_14 914..962 CDD:426342
CBM_14 1175..1212 CDD:426342
obst-FNP_649186.1 CBM_14 43..91 CDD:426342 16/48 (33%)
CBM_14 156..198 CDD:426342 11/41 (27%)
CBM_14 272..321 CDD:426342 17/45 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.