DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and GLR3.4

DIOPT Version :10

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_172012.2 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:473 Identity:72/473 - (15%)
Similarity:133/473 - (28%) Gaps:204/473 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   373 KNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHP------------R 425
            :|..:|.::..::.:..|:....|.....|.:::|             |..|            :
plant   548 RNPSYDNLVNEVVADNFDVAVGDITIVTNRTRYVD-------------FTQPFIESGLVVVAPVK 599

  Fly   426 STQKDRIVFLQPFTNDVWILIVGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQ 490
            ..:.....||:|||.::|.:..|..:....::|.|                        .|.:.|
plant   600 EAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWIL------------------------EHRFNQ 640

  Fly   491 QQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKK 555
                                                                          :.:
plant   641 --------------------------------------------------------------EFR 643

  Fly   556 APERVGLFLESVLFFVGIICQQGLGFSTSFVS---------GRCIVITSLLFSFCIYQFYSASIV 611
            .|.|..|.  ::.:|         .|||.|.|         ||.::|..|.....|...|:||:.
plant   644 GPPRRQLI--TIFWF---------SFSTMFFSHRENTVSSLGRFVLIIWLFVVLIINSSYTASLT 697

  Fly   612 GTL-LMEKPKTIKTLSDLVHSSLKVGMEDILYNRDYFLH-----------TKDPVSMELYAKKIT 664
            ..| :.:....|:.:..||.|:..:|::|..:.|:|.::           .||.   |.|...:.
plant   698 SILTIRQLTSRIEGIDSLVTSNEPIGVQDGTFARNYLINELNILPSRIVPLKDE---EQYLSALQ 759

  Fly   665 SVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAF 729
            ..|......|..||......:.|:....:|.:         .::...:.|           ||||
plant   760 RGPNAGGVAAIVDELPYIEVLLTNSNCKFRTV---------GQEFTRTGW-----------GFAF 804

  Fly   730 HVDVAAAYKIIAETFSEQDICDLTEVSMFPPQKTVSIMQKNSPMRKVISYGLRRVTETGILTYHF 794
                                                  |::||:...:|..:.:::|.|.|....
plant   805 --------------------------------------QRDSPLAVDMSTAILQLSEEGELEKIH 831

  Fly   795 NVWHSRKPPCVKKIETSD 812
            ..|.:.|..|..:|..|:
plant   832 RKWLNYKHECSMQISNSE 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:473866 17/103 (17%)
Lig_chan 563..828 CDD:459656 50/271 (18%)
GLR3.4NP_172012.2 PBP1_GABAb_receptor_plant 62..450 CDD:380645
Lig_chan-Glu_bd 507..591 CDD:463166 8/55 (15%)
Lig_chan 613..867 CDD:459656 60/395 (15%)
Blue background indicates that the domain is not in the aligned region.

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