DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir64a and GLR2.7

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_180476.3 Gene:GLR2.7 / 817460 AraportID:AT2G29120 Length:952 Species:Arabidopsis thaliana


Alignment Length:436 Identity:76/436 - (17%)
Similarity:131/436 - (30%) Gaps:163/436 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 PRSTQKDRIVFLQPFTNDVWILIVGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHY 488
            |....|:..|||:|::.|:|:......|...||:|.|            ...:......||.|  
plant   567 PLKDNKNTWVFLRPWSLDLWVTTACFFVFIGFIVWIL------------EHRVNTDFRGPPHH-- 617

  Fly   489 QQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQ 553
                                                     ..||.:...:..:|      .|.:
plant   618 -----------------------------------------QIGTSFWFAFSTMN------FAHR 635

  Fly   554 KKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVG--TLLM 616
            :|....:..|:..|..||.::                           :.|.|:|::..  |:.:
plant   636 EKVVSNLARFVVLVWCFVVLV---------------------------LIQSYTANLTSFFTVKL 673

  Fly   617 EKPKTIKTLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVD 681
            .:| |:....||:..:..:|     |.|..|:.       ||          .|....||.: :.
plant   674 LQP-TVTNWKDLIKFNKNIG-----YQRGTFVR-------EL----------LKSQGFDESQ-LK 714

  Fly   682 P--NPVSTDPAKSYRDIVHSHETGAHAK-----DNAASNWLDPETGLLRHLGFAFHVDVAAAYKI 739
            |  :.|..|...|...|..|.:..|:.|     :::....::|.   .:..||.|          
plant   715 PFGSAVECDELFSNGTITASFDEVAYIKVILSQNSSKYTMVEPS---FKTAGFGF---------- 766

  Fly   740 IAETFSEQDICDLTEVSMFPPQKTVSIMQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPC 804
                             :||         |.||:...:|..:..||:...:.:..|.|. :||..
plant   767 -----------------VFP---------KKSPLTDDVSRAILNVTQGEEMQHIENKWF-KKPNN 804

  Fly   805 VKKIET--SDLHVDMDTVSSALLILLFSYAITLMILGTEILYSKWH 848
            ...:.|  |..|:.:.:.....||...:..:.|:|.....||...|
plant   805 CPDLNTSLSSNHLSLSSFWGLFLIAGIASFLALLIFVANFLYEHKH 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 13/40 (33%)
Lig_chan 563..828 CDD:278489 50/275 (18%)
GLR2.7NP_180476.3 PBP1_GABAb_receptor 40..421 CDD:107361
ANF_receptor 54..405 CDD:279440
GluR_Plant 460..799 CDD:270404 63/382 (16%)
Lig_chan 584..832 CDD:278489 65/399 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.