DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and GLR2.8

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001324459.1 Gene:GLR2.8 / 817459 AraportID:AT2G29110 Length:948 Species:Arabidopsis thaliana


Alignment Length:837 Identity:142/837 - (16%)
Similarity:253/837 - (30%) Gaps:306/837 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 SQTPSQAQSNSEWLEGVLRMEALRQIAVVDLACGAVSRRFLELASAKMLYSEKFHWLLIEDFA-- 192
            |..||:|..:....|....|....::.||.:|....||.| |.|:...:..|.:.||:.....  
plant   198 SVIPSEANDDQILKELYKLMTRQTRVFVVHMASRLASRIF-EKATEIGMMEEGYVWLMTNGMTHM 261

  Fly   193 ----WHGRTQTAEGSGKRDDGEMEEEEPPGQQIQATDDEDLPSIESFLGGMNLYMNTELTLAKRM 253
                .|||:                               |.:|:..||     :.:.:..:|.:
plant   262 MRHIHHGRS-------------------------------LNTIDGVLG-----VRSHVPKSKGL 290

  Fly   254 SEAAHYTL-----FDVWNPGLNYGGHVNLTEIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVR 313
            .:   :.|     |...||.|.                :.:.:...:...||....|.::...:.
plant   291 ED---FRLRWKRNFKKENPWLR----------------DDLSIFGLWAYDSTTALAMAVEKTNIS 336

  Fly   314 CM----VVVTNKNMT--GTLMYYLTHTMSGHIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGYV 372
            ..    ...::.|||  |||          |:   :|:..:||.|:.::                
plant   337 SFPYNNASGSSNNMTDLGTL----------HV---SRYGPSLLEALSEI---------------- 372

  Fly   373 KNGRFDGMIGA-----------------LIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFI 420
               ||:|:.|.                 .:.||..|.|    :|...:..::|.....:|     
plant   373 ---RFNGLAGRFNLIDRQLESPKFEIINFVGNEERIVG----FWTPSNGLVNVNSNKTTS----- 425

  Fly   421 FRHPRSTQKDRIVFLQPFTNDVWILIVGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPR 485
                             ||.:.:..::..|..|:      ....|: :|.:|.   |.|.|.|.:
plant   426 -----------------FTGERFGPLIWPGKSTI------VPKGWE-IPTNGK---KIKVGVPVK 463

  Fly   486 HHYQQQQQQEQVEAPVRPITAV--------------------SVVVSKEKVEEKQEEYEDST-PI 529
            ..:     ...||....|||.:                    ||:....:.|...::|:|.. .:
plant   464 KGF-----FNFVEVITDPITNITTPKGYAIDIFEAALKKLPYSVIPQYYRFESPDDDYDDLVYKV 523

  Fly   530 DAGTL-----------WQRCYQKLN-KY----------IKDRKAKQK---KAPERVGLFLESVLF 569
            |.|||           ::..|.... .|          ::|.:.|..   ..|..:.|::.:..|
plant   524 DNGTLDAVVGDVTITAYRSLYADFTLPYTESGVSMMVPVRDNENKNTWVFLKPWGLDLWVTTACF 588

  Fly   570 FV--GIIC-----------------QQGLGFSTSFVS-------------GRCIVITSLLFSFCI 602
            ||  |.:.                 |.|..|..||.:             .|.:|:........:
plant   589 FVLIGFVVWLFEHRVNTDFRGPPHHQIGTSFWFSFSTMVFAHREKVVSNLARFVVVVWCFVVLVL 653

  Fly   603 YQFYSASIVGTLLMEK--PKTIKTLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITS 665
            .|.|:|::...|.:::  |..| .:.||:.:...||.:...:.:|:.:                 
plant   654 TQSYTANLTSFLTVQRFQPAAI-NVKDLIKNGDYVGYQHGAFVKDFLI----------------- 700

  Fly   666 VPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFH 730
                ||.            .:....|.:......|...::...:||.:    |...||    |..
plant   701 ----KEG------------FNVSKLKPFGSSEECHALLSNGSISAAFD----EVAYLR----AIL 741

  Fly   731 VDVAAAYKIIAETFSEQDICDLTEVSMFPPQKTVSI---MQKNSPMRKVISYGLRRVTETGILTY 792
            ....:.|.|:..||                 ||...   ..:|||:...:|..:..||:...:.:
plant   742 SQYCSKYAIVEPTF-----------------KTAGFGFAFPRNSPLTGDVSKAILNVTQGDEMQH 789

  Fly   793 HFNVWHSRKPPCV-KKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILYSKWH 848
            ..|.|..::..|. .|...|...:.:.:.....||...:..:.|:|.....||...|
plant   790 IENKWFMKQNDCPDPKTALSSNRLSLRSFWGLFLIAGIASFLALLIFVFLFLYENRH 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 16/130 (12%)
Lig_chan 563..828 CDD:278489 51/302 (17%)
GLR2.8NP_001324459.1 PBP1_GABAb_receptor_plant 35..419 CDD:380645 53/312 (17%)
GluR_Plant 454..795 CDD:270404 69/407 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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