DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and GLR2.2

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_180048.1 Gene:GLR2.2 / 817008 AraportID:AT2G24720 Length:920 Species:Arabidopsis thaliana


Alignment Length:820 Identity:147/820 - (17%)
Similarity:261/820 - (31%) Gaps:249/820 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 SQTPSQAQSNSEWLEGVLRMEALRQIAVVDLACGAVSRRFLELASAKMLYSEKFHWLLIEDFAWH 194
            |..|..|......:|.:..|....::.:|.::....|..|:: |....|....:.|:|       
plant   199 SVIPLNATDQDISVELLKMMNMPTRVFIVHMSSSLASTVFIK-AKELGLMKPGYVWIL------- 255

  Fly   195 GRTQTAEGSGKRDDGEMEEEEPPGQQIQATDDEDLPSIESFLGGMNLY------MNTELTLAKRM 253
                        .:|.|:       .:::.::..:.::|..| |:..|      :.|..:..||.
plant   256 ------------TNGVMD-------GLRSINETGIEAMEGVL-GIKTYIPKSKDLETFRSRWKRR 300

  Fly   254 SEAAHYTLFDVW-------------NPGLNYGGHVNLTEIGSFTPTEGIQLHTW----FRTTSTV 301
            .......::.:|             :.|:|.....|:....:.:..:|:.|..:    .:|.|||
plant   301 FPQMELNVYGLWAYDATTALAMAIEDAGINNMTFSNVDTGKNVSELDGLGLSQFGPKLLQTVSTV 365

  Fly   302 RRRMDMQHARVRCMVVVTNKNMTGTLMYYLTHTMSGHIDTMNRFNFNLLMAVRDMFNWTFVLSRT 366
            :                 .|.:.|..     |.:||.:..          :|.::.|  .:.:..
plant   366 Q-----------------FKGLAGDF-----HFVSGQLQP----------SVFEIVN--MIGTGE 396

  Fly   367 TSWGYVKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAG------RSWSSRPCFIFRHPR 425
            .|.|:...|  :|::..|.:....||  .:..|.:..|.|...|      :.|..        |.
plant   397 RSIGFWTEG--NGLVKKLDQEPRSIG--TLSTWPDHLKHIIWPGEAVSVPKGWEI--------PT 449

  Fly   426 STQKDRI-------------VFLQPFTNDVWILIVGCGVLTVFILWFLTTIEWKLVPHDGS---- 473
            :.:|.||             |...|.||..        |:..|.:.|...: .:.:|:|.|    
plant   450 NGKKLRIGVPKRIGFTDLVKVTRDPITNST--------VVKGFCIDFFEAV-IQAMPYDVSYEFF 505

  Fly   474 ALIKPKGGAPPRHH-YQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQR 537
            ...||.|.....|: ...|....|.:|.|...|.::               ..|:.:|....:.:
plant   506 PFEKPNGEPAGNHNDLVHQVYLGQFDAVVGDTTILA---------------NRSSFVDFTLPFMK 555

  Fly   538 CYQKLNKYIKDRKAKQKKA---PERVGLFLESVLFF--VGIICQ----------QG--------- 578
            ....|...:||...:.|.:   |..:.|:|.:::||  |||...          :|         
plant   556 SGVGLIVPLKDEVKRDKFSFLKPLSIELWLTTLVFFFLVGISVWTLEHRVNSDFRGPANYQASTI 620

  Fly   579 --LGFST----------SFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK-PKTIKTLSDLVH 630
              ..|||          || ..|.:|:|.......:.|.|:||:...|..:: ..||.::|.|:|
plant   621 FWFAFSTMVFAPRERVLSF-GARSLVVTWYFVLLVLTQSYTASLASLLTSQQLNPTITSMSSLLH 684

  Fly   631 SSLKVGMEDILYNRDYFL-----HTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPVSTDPA 690
            ....||     |.|..|:     .|..|.|        :.||.....|.||.....|.       
plant   685 RGETVG-----YQRTSFILGKLNETGFPQS--------SLVPFDTAEECDELLKKGPK------- 729

  Fly   691 KSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQDICDLTEV 755
                            ....|:.:|.  |..:|    .|.......||::.|.|:....     .
plant   730 ----------------NGGVAAAFLG--TPYVR----LFLGQYCNTYKMVEEPFNVDGF-----G 767

  Fly   756 SMFPPQKTVSIMQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRK-PPCVKKIETSDLHVDMDT 819
            .:||         ..||:...:|..:.:|.|:.......:.|..:| ..|...:...|.:..:..
plant   768 FVFP---------IGSPLVADVSRAILKVAESPKAVELEHAWFKKKEQSCPDPVTNPDSNPTVTA 823

  Fly   820 ----VSSALLILLFSYAITLMILGTEILYSKWHNRIQLKW 855
                |.|...:.|..:.:.::.||.......|..:.:..|
plant   824 IQLGVGSFWFLFLVVFVVCVLALGKFTFCFLWKTKGKDLW 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 25/132 (19%)
Lig_chan 563..828 CDD:278489 61/308 (20%)
GLR2.2NP_180048.1 PBP1_GABAb_receptor 33..412 CDD:107361 42/276 (15%)
ANF_receptor 47..392 CDD:279440 38/254 (15%)
HisJ 438..>587 CDD:223904 33/180 (18%)
GluR_Plant 452..801 CDD:270404 85/429 (20%)
Lig_chan 582..819 CDD:278489 60/293 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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