DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and grid1a

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:631 Identity:127/631 - (20%)
Similarity:203/631 - (32%) Gaps:194/631 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 LFDVWNPGLNYGGHVNLTEIG-SFTPTEG---IQLHTWFR----TTSTVRRRMD--MQHARVRCM 315
            |.|..:.|.|  .||....:| |::.|.|   .:|.||..    ..|....|.|  ||...::.:
Zfish   381 LMDFRSNGAN--SHVQFEILGTSYSETFGKDVKRLATWDSDRGLNGSLRENRADHGMQGITLKVV 443

  Fly   316 V------VVTNKNMTGTLMYYLTHTMSGHIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGY--- 371
            .      |:..:|:.|....|            ..|:.::|.|:..:..:.:.:.:.....|   
Zfish   444 TLLEEPFVMVAENILGQPKRY------------KGFSIDVLDALAKILGFKYEMYQVADAKYGSP 496

  Fly   372 VKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVF-- 434
            ..||.::||||.||....|:..:.|....||...:|.:.|........:.   ..|::...:|  
Zfish   497 QTNGSWNGMIGELIGKRADVAISAITITPERENVVDFSKRYLDYSVGILM---TKTEERLNIFSL 558

  Fly   435 LQPFTNDVWILIVGC----GVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQE 495
            |.||...||..|...    ||: ||:|                                ::.|..
Zfish   559 LAPFDLAVWACIAAAIPVVGVM-VFLL--------------------------------RRVQSV 590

  Fly   496 QVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERV 560
            :.:.|..|....||..|                                                
Zfish   591 RSQNPPGPHQPASVTTS------------------------------------------------ 607

  Fly   561 GLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITS---LLFSFCIYQFYSASIVGTLLMEK-PKT 621
              |..::....|...|||   ..||:|...:.|..   .||:..:...|:|::...|.:.: ...
Zfish   608 --FQSAIWIVYGAFVQQG---GESFMSSMALRIAMGSWWLFTLIVCSSYTANLAAYLTVSRMDNA 667

  Fly   622 IKTLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPVS 686
            |:|..||...|      :|.|..     .::....|.:..|.|                  ||:.
Zfish   668 IRTFQDLSKQS------EINYGT-----VRESAVFEYFRVKGT------------------NPLE 703

  Fly   687 TDP--AKSYRDIVHSHETGAHAKDNAASNWLDPETGL--LRHLGFAFHVDVAA-AYKIIAETFSE 746
            .|.  |:.:|.|..:     ..:||:.::   |..|:  ::...:||..|:|. .|..:.:    
Zfish   704 QDSTFAELWRTINKN-----QGQDNSVTS---PAEGIRKVKRDPYAFLWDMAVLEYAALTD---- 756

  Fly   747 QDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCVKKIET 810
             |.|.|.........|...: :|..||.|.:.|..:..:.|.|.|......|..||..|     .
Zfish   757 -DDCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQEKGDLDILKQKWWPRKGRC-----D 815

  Fly   811 SDLHVDMDTVSSALLILLFSYAITLMILGTEILYS-------KWHN 849
            .|.|.:..|...||  .|.|:|....||...:|.:       .|.|
Zfish   816 LDKHAEPQTEGRAL--RLHSFAGVFCILAAGLLLACLVAALESWWN 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 29/122 (24%)
Lig_chan 563..828 CDD:278489 60/274 (22%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 13/44 (30%)
PBP2_iGluR_delta_1 437..809 CDD:270448 93/514 (18%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591123
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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