DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Grid2

DIOPT Version :10

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:706 Identity:124/706 - (17%)
Similarity:237/706 - (33%) Gaps:212/706 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 MLYSEKFHWLLIEDFAWHGRTQTAEGSGKRDDGEMEEEEPPGQQIQATDDEDLPSIESFLGGMNL 241
            :|.:..||..| ||..||.....:         .:.:...|.|..::.    |.:|:.  ||:| 
  Rat   332 LLLANAFHKKL-EDRKWHSMASLS---------CIRKNSKPWQGGRSM----LETIKK--GGVN- 379

  Fly   242 YMNTELTLAKRMSEA-AHYTLFDVWNPGLNYGGHV--NLTEIGSFTPTEGIQLHTWFRTTSTVRR 303
            .:..:|...:..... .|:.:.     |.|||..:  .:.::|.:.|..|:       ..|...:
  Rat   380 GLTGDLEFGENGGNPNVHFEIL-----GTNYGEELGRGVRKLGCWNPVTGL-------NGSLTDK 432

  Fly   304 RMDMQHARVRCMVVVTNKNMTGTLMYYLT----------HTMSGHIDTMNRFNFNLLMAVRDM-- 356
            :::              .||.|.::..:|          ..:.|.......|:.::|.|:.:.  
  Rat   433 KLE--------------NNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLG 483

  Fly   357 FNWTFVLSRTTSWGY-VKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFI 420
            ||:...::....:|. .::|.::|::|.|:....|||.:.:....:|...:|...|........:
  Rat   484 FNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVL 548

  Fly   421 FRHPRSTQKDRIVFLQPFTNDVWILIVGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPR 485
            .|....| .|....|.||...:|..|.|. ||.|.:|.:|  :.|.               .|||
  Rat   549 LRRAEKT-VDMFACLAPFDLSLWACIAGT-VLLVGLLVYL--LNWL---------------NPPR 594

  Fly   486 HHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRK 550
                         ..:..:|:.::.                     .::|               
  Rat   595 -------------LQMGSMTSTTLY---------------------NSMW--------------- 610

  Fly   551 AKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLL 615
                              |..|...|||.....:.::.|.::....||:..:...|:|::...|.
  Rat   611 ------------------FVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLT 657

  Fly   616 MEK-PKTIKTLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVP--TTKENEADED 677
            :.: ..:|::|.||                                .|.|.:|  |..::...:.
  Rat   658 ITRIESSIQSLQDL--------------------------------SKQTDIPYGTVLDSAVYQH 690

  Fly   678 EPVDP-NPVSTDP--AKSYRDIVHSHETGAHAKDNAASNWLDPETGL--LRHLGFAFHVDVAAAY 737
            ..:.. ||...|.  ::.:|.|..|        :.:.:|.|:.:.|:  :::..:||..| ||..
  Rat   691 VRMKGLNPFERDSMYSQMWRMINRS--------NGSENNVLESQAGIQKVKYGNYAFVWD-AAVL 746

  Fly   738 KIIAETFSEQDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRK 801
            :.:|  .::.| |....|......:...| :|..||.|.|.|..:..:.::|.:....:.|..:.
  Rat   747 EYVA--INDPD-CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN 808

  Fly   802 PPCVKKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILYS-------KWHNR 850
            ..|       ||:..:|.......:.:.|.|....||...|:.|       .|.:|
  Rat   809 GQC-------DLYSSVDAKQKGGALDIKSLAGVFCILAAGIVLSCLIAVLETWWSR 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:473866 28/116 (24%)
Lig_chan 563..828 CDD:459656 50/273 (18%)
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345 5/13 (38%)
Periplasmic_Binding_Protein_type1 28..429 CDD:471960 24/125 (19%)
PBP2_iGluR_delta_2 440..806 CDD:270449 85/495 (17%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.

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