DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir64a and grin3ba

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:934 Identity:183/934 - (19%)
Similarity:289/934 - (30%) Gaps:338/934 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 HWWLLVFLPLSC--QGLPEHELLELELDYGLAEPQRTSLLQSSLILQFSQDYKHIPRITYFTCQK 64
            ||.|...|.||.  :.:.|.:::|| |...|:   ||....:|.::.|..|    |..|......
Zfish   212 HWHLWETLNLSRLEENISEDKVMEL-LSQLLS---RTPSAPASSVVLFGSD----PECTATVLHC 268

  Fly    65 PH------------------------LQTP---------NQIPNAAEHRDAFAAKNFQLIKSLYE 96
            .|                        :.:|         |:.|.....||     ..|||.....
Zfish   269 AHQLSGTLPPMHWIMGYPLSLDSLHSIGSPLGLMAYGEVNRKPLNFYIRD-----TLQLIGRAVY 328

  Fly    97 SELFVRIVLLDVLAQSPTSGRPNRPGNGPTGGFSQTPSQAQ------SNSEW--LEGVLRMEALR 153
            :...||..|..:........:||:         .:.||..|      ||:.:  |.|.:|:|   
Zfish   329 AATMVRPDLALIQNMVNCFDKPNK---------HELPSSGQYLARFLSNTSFTGLTGPVRVE--- 381

  Fly   154 QIAVVDLACGAVSRRFLELASAKMLYSEKFH-WLLIED----------FAWHGRTQTAEGSGKRD 207
                         |.|     :::|.|::|| |.|..|          .:|             .
Zfish   382 -------------RSF-----SRVLTSQRFHIWSLQRDPLGQPSWVTVASW-------------Q 415

  Fly   208 DGEMEEEEP---PGQQIQATDDEDLPSIESFLGGMNLYMNTELTLAKRMSEAAHYTLFDVWNPGL 269
            .|.:|.||.   ||  :.....||.|.|.  |||.                         |..||
Zfish   416 SGRLELEEQGLWPG--VTQHQREDGPGIR--LGGR-------------------------WQAGL 451

  Fly   270 NYGGH----VNLTEIGSFTPTEGIQLHTWFRTTSTVRRRMDMQ---HARVRCMVVVTNKN-MTGT 326
            ...|.    |.|.|            |.:..|     |.:|.:   .|...|:...||.: :...
Zfish   452 PVAGSRLRVVTLVE------------HPFVFT-----REVDEEGQCPAGQLCLDPQTNNSEVLNQ 499

  Fly   327 LMYYLTHTMSGHIDTMNR-----FNFNLL-MAVRDM-FNWTFVLSRTTSWGYVKNGRFDGMIGAL 384
            |...|..|.|..:.|..|     :..:|| ....|| |.:...:.....:|..|.||:.|::|.|
Zfish   500 LFRELEQTNSSSLPTDMRKCCYGYCIDLLEKLAEDMHFEFDLYIVGDGKYGAWKGGRWSGLVGDL 564

  Fly   385 IRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWILIVGC 449
            :....|:..........|.:.||.....:|:....:.| .:.|......|:.|..   |.:.||.
Zfish   565 LSGVADMAVTSFSINSARSRVIDFTSPFFSTSLGILVR-SKDTAAPIGAFMWPLH---WSMWVGI 625

  Fly   450 GVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAV---SVVV 511
            .|.......|:|..||.          .|.|..|   |.:.:.:.....:.:....|:   ..|.
Zfish   626 FVALHITALFITLYEWN----------SPFGMTP---HGRNRIRVFSYSSALNLCYAILFGRTVA 677

  Fly   512 SKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQ 576
            ||             ||        :|:                                     
Zfish   678 SK-------------TP--------KCW------------------------------------- 684

  Fly   577 QGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEKPKTIKTLSDLVHSSLKVGMEDIL 641
                      :||.::....:|...:...|:|::...::.|  ||.:.:|         |:.|:.
Zfish   685 ----------TGRFLMNLWAIFCLLVLSSYTANLAAVMVGE--KTFEEVS---------GIHDVK 728

  Fly   642 YNR---DYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPVS---TDPAKSYRDIVHSH 700
            .:.   .:...|....|.|.|.||  |.|...|.....::|..|:.||   |||.          
Zfish   729 LHHPSLGFRFGTVRESSAEDYVKK--SFPEMHEYMRRFNKPTTPDGVSTLKTDPP---------- 781

  Fly   701 ETGAHAKDNAASNW---LDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQDICDLTEVSMFPPQK 762
            :..|...|.|..::   :|.:..||. :|..|.::   .|.|                       
Zfish   782 QLDAFIMDKALLDYEVSIDADCKLLT-VGKPFAIE---GYGI----------------------- 819

  Fly   763 TVSIMQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCVKKI----ETSDLHVDMDT---- 819
               .:.:|||:.:.:|..:.|....|.:....:.|: :..||.|::    ||..:.:...:    
Zfish   820 ---GLPQNSPLTRNVSEYVSRYKSDGYMDMLHDKWY-KVVPCGKRVFAVTETLQMGIQHFSGLFV 880

  Fly   820 -----VSSALLILLFSYAITLMIL 838
                 |:.|||.||..:|....||
Zfish   881 LLCVGVAGALLTLLGEHAFFRFIL 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 25/114 (22%)
Lig_chan 563..828 CDD:278489 53/286 (19%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 55/271 (20%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 100/549 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591546
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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