DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and grin3a

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:1007 Identity:174/1007 - (17%)
Similarity:315/1007 - (31%) Gaps:338/1007 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LVFLP-----LSCQG-------LPEHELLE--LELDYGLAE--------------PQRTSLLQS- 41
            :||||     |:.:.       ||.:..||  :.::.||.|              ....|.||| 
Zfish   125 VVFLPRDSVLLASESLNRVAGLLPYNLTLEIVMAVEAGLGELPAFSFSSSSTPACADPVSFLQSV 189

  Fly    42 ---------SLILQFSQDYKHIPRITYF--TCQKP-----------------HLQTPNQIPNAAE 78
                     |.|:.|.|:...:.::.:.  |.|.|                 |.|...|.|..::
Zfish   190 CHTVIVQGVSAIISFPQNRDELVKLEFIASTLQIPVISVVQSEFQRQTQNLLHFQMAMQNPQTSQ 254

  Fly    79 HRDAFAAKNFQLIKSLYESELFVRIVLLDVLAQSPTSGRPNRPGNGPTGGFSQTPSQAQSNSEWL 143
                     ..||.||.....:..:.|  |:.|..              ..|.......:||::.
Zfish   255 ---------ANLIFSLLSMNNWFDVSL--VMCQQM--------------NISDFVFLLHNNSKFH 294

  Fly   144 EGVL-------------------RMEALRQ--IAVVDLACGA--VSRRFLELASAKMLYSEKFHW 185
            .|.:                   ::|:::.  ..:|...|..  :.|.|..:|...::..: :||
Zfish   295 LGTVLKISTNSSSKNDFHIFLQAQLESIKDSTSTLVTFGCDIRDIRRIFTTIAKFGLILPD-YHW 358

  Fly   186 LL-----IEDFAWHGRTQTAEGSGKRDDGEMEEEEPPGQQI-------QATDDEDL---PSIESF 235
            ::     :|:....|........|:..:..::.......::       .||....|   |...:.
Zfish   359 IIGDSQNVEELRTEGLPMGLLAHGRMGEPSLDHYVQDALELVARAVGSAATVSPQLALIPGTTNC 423

  Fly   236 LGGMNLYMNTELTLAKR----------------------MSEAAHYTLFDVWNPGLNYGGHVNLT 278
            |..:.....|..|...|                      :||:.|:    :||...:..|....|
Zfish   424 LARLEAKNLTSGTFLSRYMASTSFDGLSGCISVQEESTIISESHHF----IWNLQHDPIGKPMWT 484

  Fly   279 EIGSFTPTEGIQLH-TW-----------FRTTSTVRRRMD--MQH---------------ARVRC 314
            .:||:...:.:..: .|           :|.:|.:..|:.  ::|               |...|
Zfish   485 RLGSWKHGKVVMDYGVWPNKRRSQPGADWRHSSRLHLRVVTLVEHPFVFTRDVDDEGLCPAGQLC 549

  Fly   315 MVVVTNKNMTGTLMYYLTHTMSGHIDTM--------NRFNFNLL-MAVRDM-FNWTFVLSRTTSW 369
            :..:||..   .|:..|...:.|..||:        ..:..:|| ....|| |::...:.....:
Zfish   550 LDPLTNDT---ALLESLFQGLQGANDTVPLEFKKCCYGYCIDLLEKLAEDMGFDFDLYIVGDGKY 611

  Fly   370 GYVKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVF 434
            |..||||:.|::|.|:.....:..........|.:.||.....:|:....:.| .|.|......|
Zfish   612 GAYKNGRWTGLVGDLMSGAAHLAVTSFSINSARSQVIDFTSPFFSTSLGILVR-TRDTAAPIGAF 675

  Fly   435 LQPFTNDVWI-LIVGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVE 498
            :.|....:|: :.|...|..|    |||..|||          .|.|..|               
Zfish   676 MWPLHWSMWLGIFVSLHVTAV----FLTLYEWK----------SPFGMTP--------------- 711

  Fly   499 APVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLF 563
                            :...:...:..|:.::.      ||                        
Zfish   712 ----------------RGRNRDRVFSFSSALNV------CY------------------------ 730

  Fly   564 LESVLFFVGIICQQGLGFSTSFVSGRCIV---ITSLLFSFCIY--QFYSASIVGTLLMEKPKTIK 623
              ::||          |.:.:....:|..   :.:|...||::  ..|:|::...::.|  ||.:
Zfish   731 --AILF----------GRTAAIKPPKCWTGRFLMNLWAIFCLFCLSTYTANLAAVMVGE--KTYE 781

  Fly   624 TLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPVSTD 688
            .||.:....|....:...:.      |....|.|.|.||  |.|...|.....:.|..|:.:.  
Zfish   782 QLSGIHDPKLHHPSQGFRFG------TVRESSAEDYVKK--SFPEMHEYMRRYNAPTTPDGID-- 836

  Fly   689 PAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQDICDLT 753
                            |.||       ||:           .:|.....|.:.:.::.   .|..
Zfish   837 ----------------HLKD-------DPQ-----------KLDAFIMDKALLDYWAH---ADKX 864

  Fly   754 EVSMFPPQKTVSIMQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCVKK--IETSDLHVD 816
            .:|:......:.:.| |||:...||..:.:....|.:....:.|: :..||.|:  ..|..|.:.
Zfish   865 YISLLLTGYGIGLKQ-NSPLTSNISELVSQYKSDGFMDMLHDKWY-KVVPCGKRSFAVTETLQMG 927

  Fly   817 MDTVSSALLILLFSYAITLM-ILGTEILYSKW 847
            :...|...::|....|::|: .||..|:: :|
Zfish   928 IKHFSGLFVMLCVGVALSLLTTLGEHIVH-RW 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 27/115 (23%)
Lig_chan 563..828 CDD:278489 49/271 (18%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 66/406 (16%)
ANF_receptor 132..452 CDD:279440 53/345 (15%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 91/530 (17%)
Lig_chan 682..941 CDD:278489 66/396 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591547
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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