DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and grin2aa

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_021329529.1 Gene:grin2aa / 563297 ZFINID:ZDB-GENE-070424-129 Length:1460 Species:Danio rerio


Alignment Length:799 Identity:134/799 - (16%)
Similarity:239/799 - (29%) Gaps:285/799 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LAQSPTSGRPN-RPGNGPTGGFSQTPSQAQSNSEW---LEGVLRMEALRQIAVVDLACGAVSRRF 169
            :..|.|:|.|. .|...|:|..|      .|..:|   ||..:|    ..:.::..|..|:...|
Zfish   253 IVPSLTTGNPEITPDTFPSGMIS------VSYDDWDYPLEARVR----DGLGIITTAAAAMLEEF 307

  Fly   170 LELASAKMLYSEKFHWLLIEDFAWHGRTQTAEGSGK----RDDGEMEEEEPPGQQIQATDDEDLP 230
            .::..||.....:.....:...|.|.........||    .:||  .:..|....|....|.:..
Zfish   308 GDIPEAKTSCYGQMEKTKLPPSALHKYMMNVTWDGKDLSFTEDG--YQVHPKLVVIVLNKDREWE 370

  Fly   231 SIESFLGGMNLYMNTELTLAKRMSEAAHYTLFDVWNPGLNYGG-------HVNLT--EIGSFTPT 286
            .       |..:.|..|||.           :.|| |..|..|       |:.:.  |...|...
Zfish   371 K-------MGKWENQSLTLK-----------YPVW-PRFNSFGDAETDDNHLTIVTLEEKPFVIV 416

  Fly   287 EGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMT---GTLMYYLTHTMSGHIDTMNRFNFN 348
            |.::     |.|.|..|.      .|.|...:.: |.|   ||   |:.....|       |..:
Zfish   417 ENVE-----RLTGTCMRN------SVPCRKHIKD-NTTEGGGT---YIKKCCKG-------FCID 459

  Fly   349 LLMAVRDMFNWTFVLSRTTSWGYVK--NGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGR 411
            :|..:.....:|:.|...|:..:.|  |..::||:|.::..:..:....:....||.:.||.:..
Zfish   460 ILKKIARNVKFTYDLYLVTNGKHGKKINNVWNGMVGEVVNKKAVMAVGSLTINEERSEVIDFSVP 524

  Fly   412 SWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVW----ILIVGCGVLTVFI---------------- 456
            ...:....:......|.... .||:||:..||    ::::....:.||:                
Zfish   525 FVETGISVMVSRSNGTVSPS-AFLEPFSASVWVMMFVMLLLVTAMAVFMFEYISPLGFNRNLAQG 588

  Fly   457 -------------LWFLTTIEWKLVPHDGSALIKPKG---------------------------- 480
                         :|.|    |.||.::...:..|||                            
Zfish   589 KDPHGPSFTMGKAVWLL----WGLVFNNSVPVQNPKGTTSKFIVSVWAFFAVIFLASYTANLAAF 649

  Fly   481 --------------------------------------------GAPPRHHYQQQQQQE------ 495
                                                        ..|..|.|..:..|.      
Zfish   650 MIQEEFVDQVTGLSDKKFQSPYSYSPPFRFGTVPNGSTERNIRKNYPDMHQYMVKYHQTGVNDAL 714

  Fly   496 ------QVEAPVRPITAVSVVVSKE---KVEEKQEEYEDST-----PIDAGTLWQR--------- 537
                  :::|.:.....::.:..::   |:......|..:|     .:..|:||:|         
Zfish   715 VSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGYIFATTGYGIALQKGSLWKRPVDLAILAI 779

  Fly   538 -----------------CYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSF 585
                             |:.:.|:.:    :.|.......|:|..       :....||...| |
Zfish   780 IGDGEMEELEAQWLTGICHNEKNEVM----SSQLDVDNMAGVFYM-------LATAMGLSLIT-F 832

  Fly   586 V-------------SGRCIVITSLLFSF------CIYQF------------YSASIVGTLLMEKP 619
            |             :|.|.....||||.      ||:..            :|.......|::..
Zfish   833 VWEHLFYWRLRYCFTGVCSGTPGLLFSISRGIWSCIHGVHIDMKKKSSDLDFSPQSNMLKLIKSA 897

  Fly   620 KTIKTLSDLVHS---SLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVD 681
            |.:..:::|..|   |.|.|.|        |:|:..|:.|::.|:|...:.|...:.|.:|...|
Zfish   898 KQMTNMTNLSGSRINSPKRGGE--------FMHSASPMIMDMMAEKGNFIYTDNRSYAQKDIYGD 954

  Fly   682 PNPVSTDPAKSYRDIVHSH 700
            .:.:.:.....::|.::::
Zfish   955 SSDLQSYLTNRHKDHLNNY 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 23/148 (16%)
Lig_chan 563..828 CDD:278489 34/172 (20%)
grin2aaXP_021329529.1 PBP1_iGluR_NMDA_NR2 33..389 CDD:107373 34/166 (20%)
PBP2_iGluR_NMDA_Nr2 400..799 CDD:270436 60/425 (14%)
NMDAR2_C 836..1460 CDD:313729 28/146 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591439
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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