DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and grik4

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:648 Identity:115/648 - (17%)
Similarity:204/648 - (31%) Gaps:217/648 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 VWNPG---LNY---------GGHV---------------------NLTEIGSFTPTEGIQLH--- 292
            :|..|   :||         .||:                     .|.:||.:...:|:.:.   
Zfish   340 IWEHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALRIMQNSRDGLRQIGQWHSEQGLSMERKL 404

  Fly   293 -------TWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTGTLMYYLTHTMSGHIDTMNRFNFNLL 350
                   |.|.||.|:...::..:..:|    ..::.:.|.             |....|..::|
Zfish   405 PSLNVTDTLFNTTLTITTILENPYVMLR----ANHQELEGN-------------DRYEGFCVDML 452

  Fly   351 MAVRDMFNWTFVLSRTTSWGY---VKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRS 412
            ..:.|:..:.:.:.......|   ..||.:.||:|.||..:.|:..|.:....||.|.||.:...
Zfish   453 KELADILKFKYRIRLVGDGVYGVPGANGTWTGMVGELISRKADLAVAALTITAEREKVIDFSKPF 517

  Fly   413 WSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWI------LIVGCGVLTVFILWFLTTIEWKLVPHD 471
            .:.....::|.....:.....||.||:..||:      |.|.|   .:|::..||..|| ..|| 
Zfish   518 MTLGISIMYRVHIGRRPGYFSFLDPFSPGVWLFMLLAYLAVSC---VLFLVARLTPYEW-YNPH- 577

  Fly   472 GSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQ 536
                                                                    |...|    
Zfish   578 --------------------------------------------------------PCLKG---- 582

  Fly   537 RCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFC 601
            ||...:|:|             .:|   .|..|.||...|||...:...:|.||:......|:..
Zfish   583 RCSLLINQY-------------SLG---NSFWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLI 631

  Fly   602 IYQFYSASIVGTLLMEKPKT-IKTLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITS 665
            |...|:|::...|.:::.:. |:::.||.                      |..::|.......|
Zfish   632 IISSYTANLAAFLTVQRMEVPIESVDDLA----------------------DQTAIEYGTMHGGS 674

  Fly   666 VPTTKENEADEDEPVDPNPVSTDPAKSYR---DIVHSHETGAHAKDNAASNWLDPETGLLRHLGF 727
            ..|..:|..               .::|:   :.::|.:.....|..        |.|:.|.|..
Zfish   675 TMTFFQNSR---------------YQTYQRMWNFMYSKQPSVFVKST--------EEGIARVLNS 716

  Fly   728 AFHVDVAAAYKIIAETFSE---QDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETG 788
            .:      || ::..|.:|   |..|:||::......|...| |...|..|......:.|:.|..
Zfish   717 NY------AY-LLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPLGSVYRDEFDLAILRLQEEN 774

  Fly   789 ---ILTYHFNVWHSRKPPCVKKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILYSKWH 848
               ||...:  |...|  |.|:.:.....:.|:.:....::|:....:.:.:...|.::...|
Zfish   775 RLEILKRKW--WDGGK--CPKEEDHRAKGLGMENIGGIFVVLVCGLLVAIFMAVLEFVWMLRH 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 29/122 (24%)
Lig_chan 563..828 CDD:278489 52/275 (19%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 10/59 (17%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 92/511 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590967
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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