DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and GluRIB

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster


Alignment Length:631 Identity:121/631 - (19%)
Similarity:211/631 - (33%) Gaps:144/631 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 LNYGGHV-------NLTEIGSFTPTEGIQ-LHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTG 325
            :||..||       .:.::..:....|:| |:..:     ||.|..::..:.|..:|.|......
  Fly   451 VNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKY-----VRLRPHVEFEKNRTYIVTTVLEEPY 510

  Fly   326 TLMYYLTHTMSGHIDTMNRF-----NFNLLMAVRDMFNWTFVLSRTTSWGYVK---NGRFDGMIG 382
            .::..:......|.:  |||     :...|:|.....|:...|.:..::|..|   :|.:|||:|
  Fly   511 IMLKQVAFGEKLHGN--NRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVG 573

  Fly   383 ALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWILIV 447
            .|:|.|.||..|.:....||.:.||.:....|.....:.:.|.........|:.|.:.::|:.::
  Fly   574 ELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWVSVI 638

  Fly   448 GCGVLTVFILWFLTTI---EWKLVPHDGSALIKPKGGAPPRHHYQQQQQQ-------EQVEAPVR 502
            ...:....:|:|::..   ||:||.........|.   |..||.|...||       ..:.||..
  Fly   639 FSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPD---PHAHHEQLANQQPPGIIGGAPLPAPPG 700

  Fly   503 PIT----------AVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAP 557
            |.|          |:...:|   ..........|..::..::|                      
  Fly   701 PPTPGAQTAAGAAALQAALS---AGSPGSGGSSSAVVNEFSVW---------------------- 740

  Fly   558 ERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK---- 618
                   .|..|.:....|||...|...||||....:...|:..:...|:|::...|.:|:    
  Fly   741 -------NSFWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTP 798

  Fly   619 ---PKTIKTLSDLVHSSLKVGMEDILYNRDYF-LHTKDPVSMELY--AKKITSVPTTKENEADED 677
               |:.:...:::.:.:|..|.....:.|... ||.|    |..|  ::|...|||..|.     
  Fly   799 INSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLHNK----MWEYMNSRKHVFVPTYDEG----- 854

  Fly   678 EPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAE 742
                        .|..|:....:.....:..|...|..:|                         
  Fly   855 ------------IKRVRNSKGKYALLVESPKNEYVNAREP------------------------- 882

  Fly   743 TFSEQDICDLTEVSMFPPQKTVSIMQK-NSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCV- 805
                   ||..:|......|...|... .|.::..|:..:..:.|.|.|....|.|...|..|. 
  Fly   883 -------CDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYEKAECST 940

  Fly   806 -KKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILYSKWHNR 850
             |..|||...:.:..|:....||:....:::.:...|..:....:|
  Fly   941 HKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEYCFRSRDSR 986

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 27/119 (23%)
Lig_chan 563..828 CDD:278489 54/277 (19%)
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 4/26 (15%)
ANF_receptor 55..461 CDD:279440 4/9 (44%)
PBP2_iGluR_AMPA 497..938 CDD:270433 101/530 (19%)
Lig_chan 632..967 CDD:278489 77/422 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462534
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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