DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Ekar

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster


Alignment Length:658 Identity:116/658 - (17%)
Similarity:203/658 - (30%) Gaps:202/658 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 IQATDDEDLPSIESFLGGMNLYMNTELTLAKRMSEAAHYTLFDV--WNPGLNYGGHVNLTEIGSF 283
            :.|.:.:.|.....|..|..:....:|...|:      :::..|  |.|    .||:|:||...|
  Fly   341 LNAVEWKGLTGPIQFKDGQRVQFKLDLIKLKQ------HSIVKVGEWTP----HGHLNITEPSMF 395

  Fly   284 TPTEGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVT-----------NKNMTGTLMYYLTHTMSG 337
            .....:.:                      .:||:|           .||.||...:|       
  Fly   396 FDAGSMNV----------------------TLVVITILETPYVMMHYGKNFTGNERFY------- 431

  Fly   338 HIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGY----VKNGRFDGMIGALIRNETD--IGGAPI 396
                  .|..::|..:.....:.::|.......|    .:.|.::||:..|::.:.|  :|...|
  Fly   432 ------GFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTI 490

  Fly   397 FYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWILIVGCGVLT---VFILW 458
            .|  .|...||......:.....:|:.|.|.......|:.|...::||.::....|.   ::|:.
  Fly   491 TY--ARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVG 553

  Fly   459 FLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEY 523
            .|:.||||.                                    |.|.                
  Fly   554 KLSPIEWKC------------------------------------INAC---------------- 566

  Fly   524 EDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSG 588
             |...|..|..:.                          ..:|..|.:|...||........:|.
  Fly   567 -DLENISIGNQFS--------------------------LTDSFWFTIGTFMQQSPDIYPRAMST 604

  Fly   589 RCIVITSLLFSFCIYQFYSASIVGTLLMEKP-KTIKTLSDLV-HSSLKVGMEDILYNRDYFLHTK 651
            |.|..|...||..|...|:|::...|..|:. ..|:...||. .:.:..|..|......:|   :
  Fly   605 RIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFF---R 666

  Fly   652 DPVSMELYAKKITSVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLD 716
            |.| :|.|.|...|:...|           |:..:|    :|.|.:.....|             
  Fly   667 DSV-IETYKKIWRSMDNKK-----------PSAFTT----TYEDGIKRVNQG------------- 702

  Fly   717 PETGLLRHLGFAFHVDVAAAYKIIAETFSEQDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYG 780
                     .:||.::......|:      |..|:||::......|...| ..|.||.|..||..
  Fly   703 ---------NYAFLMESTMLDYIV------QRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLA 752

  Fly   781 LRRVTETG-ILTYHFNVWHSRKPPCVKKIETSDLHVD---MDTVSSALLILLFSYAITLMILGTE 841
            :..:.|.| |...:...|.:....|.:|..:.....:   ::::....::|:....:..::...|
  Fly   753 ILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFE 817

  Fly   842 ILYSKWHN 849
            ..|:..:|
  Fly   818 FWYNFRYN 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 24/122 (20%)
Lig_chan 563..828 CDD:278489 55/271 (20%)
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 11/56 (20%)
ANF_receptor 39..371 CDD:279440 5/29 (17%)
PBP2_iGluR_Kainate 402..771 CDD:270432 94/531 (18%)
Lig_chan 533..807 CDD:278489 70/399 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462975
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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