DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and gria4b

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_997917.2 Gene:gria4b / 336069 ZFINID:ZDB-GENE-030131-8013 Length:904 Species:Danio rerio


Alignment Length:1014 Identity:179/1014 - (17%)
Similarity:316/1014 - (31%) Gaps:336/1014 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LSCQGLPEHELLELELDYGLAEPQRTSLLQ--SSLILQFSQDYKHIPRITYFTCQKPHLQTPN-- 71
            :||..|    ||.....:||......|.:|  ...|....|:|... |:..|.    |..:||  
Zfish     3 ISCNQL----LLLFSCVWGLTMGAFPSSVQIGGLFIRNTDQEYTAF-RLAIFL----HNTSPNAS 58

  Fly    72 QIP-NAAEHRD------AFAAKNFQLIKSLYESELFVRIVLLD------------------VLAQ 111
            :.| |...|.|      :||..|  ...|.|...:|....|.|                  :...
Zfish    59 EAPFNLVPHVDNIETANSFAVTN--AFCSQYSRGVFAIFGLYDKRSVHTLTSFCGALHISLITPS 121

  Fly   112 SPTSG--------RPNRPG-----------------NGPTGGFS--QTPSQAQSNSEWLEGVLRM 149
            .||.|        ||:..|                 .....|:|  |...:....:.|....:.:
Zfish   122 FPTEGESQFVLQLRPSIRGALLSLLDHYDWNRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICV 186

  Fly   150 E-----ALRQIA-----------VVDLACGAVSRRFLELASAKMLYSEKFHWLL---------IE 189
            |     :.||:.           |:||....::....::.|... :.:.:|:::         :|
Zfish   187 ENFNDASYRQLLEDLDRRQEKTFVIDLEAERLNNMLEQIVSVGK-HVKGYHYIMANLGFKDINLE 250

  Fly   190 DFAWHGRTQTA---------------EGSGKRDDGEME-EEEPPGQQIQATDDEDLPSIESFLGG 238
            .|...|...|.               :...|.|..|.. .:.||......|.|..:...|:|   
Zfish   251 RFMHGGANVTGFQLVDFSNPMVIKLMQRWNKLDQREYPGSDAPPKYTSALTYDGVMVMAEAF--- 312

  Fly   239 MNLYMNTELTLAKR-------MSEAAHYTLFDVWNPGL---------------------NYGGHV 275
            .|| ...::.:::|       .:.||      .||.|:                     :||..|
Zfish   313 RNL-RRQKVDISRRGIAGDCLANPAA------PWNQGIDMERTLKQVHLQGLTGNVQFDHYGRRV 370

  Fly   276 NLT----EIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARV---------RCMVVVT-------- 319
            |.|    |:.|..|.   ::..|......|   :...||.:         |.::|.|        
Zfish   371 NYTMDVFELKSNGPR---RIGYWNDADKLV---LTQDHALLPNETSGMENRTVIVTTIMEGPYVM 429

  Fly   320 -NKNMTGTLMYYLTHTMSGHIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGYVKNGRF------ 377
             .||..   ||.......|:.       .:|...:.....:.:.:|      .|.:|::      
Zfish   430 LKKNWE---MYEGNEQYEGYC-------VDLASEIAKHIGFKYKIS------IVPDGKYGARDPE 478

  Fly   378 ----DGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPF 438
                :||:|.|:..:.:|..||:...|.|.:.||.:....|.....:.:.|:.::.....||.|.
Zfish   479 TKIWNGMVGELVYGKAEIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPL 543

  Fly   439 TNDVWILIV----GCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEA 499
            ..::|:.||    |..|: :|::...:..||.                                 
Zfish   544 AYEIWMCIVFAYIGVSVV-LFLVSRFSPYEWH--------------------------------- 574

  Fly   500 PVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLFL 564
                             .|:.||..|..|.|                        :.|...|:| 
Zfish   575 -----------------TEEPEEGTDGLPSD------------------------QPPNEFGIF- 597

  Fly   565 ESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK-PKTIKTLSDL 628
            .|:.|.:|...|||...|...:|||.:......|:..|...|:|::...|.:|: ...|::..||
Zfish   598 NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL 662

  Fly   629 V-HSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVPT--TKENEADEDEPVDPNPVSTDPA 690
            . .:.:..|..|....:::|..:|..|..::::...::.||  ||.                   
Zfish   663 AKQTDIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPTVFTKT------------------- 708

  Fly   691 KSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQDICDLTEV 755
                    :.|..|..:.:...              :||.::     ..:.|...::..||..:|
Zfish   709 --------TAEGVARVRKSKGK--------------YAFLLE-----STMNEYTEQRKPCDTMKV 746

  Fly   756 SMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCVK----KIETSDLHV 815
            ......|...: ..|.|.:|..::..:.::.|.|:|....|.|...|..|..    :.:.|...:
Zfish   747 GGNLDSKGYGVATPKGSQLRSAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGGEKDKSSQAL 811

  Fly   816 DMDTVSSALLILLFSYAITLMILGTEILYSKWHNRIQLK 854
            .:..|:....||:....:.:::...|..|...:...::|
Zfish   812 SLSNVAGVFYILVGGLGLAMLVALIEFCYKSRNEAKRMK 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 25/127 (20%)
Lig_chan 563..828 CDD:278489 51/273 (19%)
gria4bNP_997917.2 Periplasmic_Binding_Protein_Type_1 28..398 CDD:324556 70/393 (18%)
PBP2_iGluR_AMPA_GluR4 414..793 CDD:270445 90/516 (17%)
Lig_chan 546..827 CDD:306551 68/402 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591537
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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