DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir64a and Grik3

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001106187.1 Gene:Grik3 / 298521 RGDID:71027 Length:919 Species:Rattus norvegicus


Alignment Length:582 Identity:102/582 - (17%)
Similarity:200/582 - (34%) Gaps:152/582 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 LTEIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTGTLMYYLT-HTMSGHID 340
            |.::|.::|.:|:.:     |.....|..::..:.....::||.......:|:..: .|:.|: |
  Rat   402 LEKVGVWSPADGLNI-----TEVAKGRGPNVTDSLTNRSLIVTTLLEEPFVMFRKSDRTLYGN-D 460

  Fly   341 TMNRFNFNLLMAVRDMFNWTFVLSRTTSWGY---VKNGRFDGMIGALIRNETDIGGAPIFYWLER 402
            ....:..:||..:..:..:::.:.......|   ...|:::||:..||.::.|:..||:.....|
  Rat   461 RFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVR 525

  Fly   403 HKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVW--ILIVGCGVLTV-FILWFLTTIE 464
            .|.||.:....:.....::|.|..|......||.|.:.|:|  :|:...||..| |::...:..|
  Rat   526 EKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFVIARFSPYE 590

  Fly   465 WKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPI 529
            |                                                          .|:.|.
  Rat   591 W----------------------------------------------------------YDAHPC 597

  Fly   530 DAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVIT 594
            :.|:                     :..|.....|.|..|.:|.:.|||.......:|.|.|...
  Rat   598 NPGS---------------------EVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGI 641

  Fly   595 SLLFSFCIYQFYSASIVGTLLMEKPKT-IKTLSDLV-HSSLKVGMEDILYNRDYFLHTKDPVSME 657
            ...|:..|...|:|::...|.:|:.:: |.:..||. .:.::.|.            .||..:|.
  Rat   642 WWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGA------------VKDGATMT 694

  Fly   658 LYAKKITSVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLL 722
            .:.|  :.:.|.::..|.         :|:.|:             |..|:|        |.|:.
  Rat   695 FFKK--SKISTFEKMWAF---------MSSKPS-------------ALVKNN--------EEGIQ 727

  Fly   723 RHLGFAFHVDVAAAYKIIAET----FSEQDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLR 782
            |.|        .|.|.::.|:    :..|..|:||::......|...| ....||.|..|:..:.
  Rat   728 RTL--------TADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAIL 784

  Fly   783 RVTETGILTYHFNVWHSRKPPCVKKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILY 844
            ::.|...|......|. |...|.::.......:.:..:....::|.....:::::...|.:|
  Rat   785 QLQEEDKLHIMKEKWW-RGSGCPEEENKEASALGIQKIGGIFIVLAAGLVLSVLVAVGEFIY 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 26/119 (22%)
Lig_chan 563..828 CDD:278489 53/271 (20%)
Grik3NP_001106187.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 4/19 (21%)
ANF_receptor 55..398 CDD:279440
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 91/500 (18%)
Lig_chan 564..832 CDD:278489 67/399 (17%)
Glutamate binding 690..692 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350049
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.