DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Grik4

DIOPT Version :10

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:661 Identity:113/661 - (17%)
Similarity:212/661 - (32%) Gaps:241/661 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 VWNPG---LNY---------GGHVNLT---------------------EIGSFTPTEGIQL---- 291
            :|..|   :||         .||:...                     :||.:...||:.:    
  Rat   340 IWQHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALKILQFTRNGFRQIGQWHVAEGLSMDSRL 404

  Fly   292 ------HTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTGTLMYYLTHTMSGHIDTMNRFNFNLL 350
                  .:.|.||..|...::..:    .|:...:::|.|.             |....|..::|
  Rat   405 YASNISDSLFNTTLVVTTILENPY----LMLKGNHQDMEGN-------------DRYEGFCVDML 452

  Fly   351 MAVRDM--FNWTFVLSRTTSWGYVK-NGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRS 412
            ..:.::  ||:...|.....:|..: ||.:.||:|.||..:.|:..|.:....||.|.||.:...
  Rat   453 KELAEILRFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPF 517

  Fly   413 WSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWI------LIVGCGVLTVFILWFLTTIEWKLVPHD 471
            .:.....::|.....:.....||.||:..||:      |.|.|   .:|::..||..|| ..|| 
  Rat   518 MTLGISILYRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSC---VLFLVARLTPYEW-YSPH- 577

  Fly   472 GSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQ 536
                                                                    |...|    
  Rat   578 --------------------------------------------------------PCAQG---- 582

  Fly   537 RCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFC 601
            ||...:|:|             .:|   .|:.|.||...|||...:...:|.||:......|:..
  Rat   583 RCNLLVNQY-------------SLG---NSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLI 631

  Fly   602 IYQFYSASIVGTLLMEKPKT-IKTLSDLV-HSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKIT 664
            |...|:|::...|.:::.:. |:::.||. .::::.|......:..:|.:::......::     
  Rat   632 IISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRMW----- 691

  Fly   665 SVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHL--GF 727
                                          :.::|.:.....|..        |.|:.|.|  .:
  Rat   692 ------------------------------NYMYSKQPSVFVKST--------EEGIARVLNSNY 718

  Fly   728 AFHVDVAAAYKIIAETFSE---QDICDLTEV----------------SMFPPQKTVSIMQKNSPM 773
            ||         ::..|.:|   |..|:||::                |:|..:..::|:|.....
  Rat   719 AF---------LLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENN 774

  Fly   774 RKVISYGLRRVTETGILTYHFNVWHSRKPPCVKKIETSDLHVDMDTVSSALLILLFSYAITLMIL 838
            |..|   |:|           ..|...|  |.|:.:.....:.|:.:....::|:....:.:.:.
  Rat   775 RLEI---LKR-----------KWWEGGK--CPKEEDHRAKGLGMENIGGIFVVLICGLIVAIFMA 823

  Fly   839 GTEILYSKWHN 849
            ..|.|::..|:
  Rat   824 MLEFLWTLRHS 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:473866 31/122 (25%)
Lig_chan 563..828 CDD:459656 47/287 (16%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 10/61 (16%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 93/533 (17%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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