DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Grin3a

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:823 Identity:146/823 - (17%)
Similarity:265/823 - (32%) Gaps:245/823 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 QSNSEW-LEGVL------------------RMEALRQI--AVVDLACGAVS-RRFLELASAKMLY 179
            ::||:: ||.|:                  :|:.:|..  .:|...|...| |:..|:::...|.
  Rat   284 ENNSKFHLESVINITANLSSTKDLLSFLQVQMDNIRNSTPTMVMFGCDMDSIRQIFEMSTQFGLS 348

  Fly   180 SEKFHWLL-----IEDFAWHGRTQTAEGSGKRDDGEMEEEEPPGQQIQATDDEDLPSIESFLGGM 239
            ..:.||:|     :|:....|........||......|.......::.|........|:..|..:
  Rat   349 PPELHWVLGDSQNVEELRTEGLPLGLIAHGKTTQSVFEYYVQDAMELVARAVATATMIQPELALL 413

  Fly   240 NLYMN------TELTLAKRMSEAAHYTLFD---------------------VWNPGLNYGGHVNL 277
            ...||      |.||..:.:|.....|.|.                     :||...:..|....
  Rat   414 PSTMNCMDVKTTNLTSGQYLSRFLANTTFRGLSGSIKVKGSTIISSENNFFIWNLQHDPMGKPMW 478

  Fly   278 TEIGSFT-----------PTEGIQLHTWFRTTSTVRRRMD--MQH---------------ARVRC 314
            |.:||:.           |.:..:..|.|:..:.:..|:.  ::|               |...|
  Rat   479 TRLGSWQGGRIVMDSGIWPEQAQRHKTHFQHPNKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLC 543

  Fly   315 MVVVTNKNMTGTLMYYLTHTMSGHIDTMNR-----FNFNLLMAVRDMFNWTFVL-----SRTTSW 369
            :..:||.:.....::...|:.:..:....:     :..:||..:.:..|:.|.|     .:..:|
  Rat   544 LDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW 608

  Fly   370 GYVKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVF 434
               |||.:.|::|.|:....::..........|.:.||.....:|:....:.| .|.|......|
  Rat   609 ---KNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVR-TRDTAAPIGAF 669

  Fly   435 LQPFTNDVWI-LIVGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVE 498
            :.|....:|: :.|...:..:    |||..|||          .|.|..|               
  Rat   670 MWPLHWTMWLGIFVALHITAI----FLTLYEWK----------SPFGMTP--------------- 705

  Fly   499 APVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPERVGLF 563
                            |...:.:.:..|:.::.      ||..|    ..|.|..|......|.|
  Rat   706 ----------------KGRNRNKVFSFSSALNV------CYALL----FGRTAAIKPPKCWTGRF 744

  Fly   564 LESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEKPKTIKTLSDL 628
            |.::.   .|.|.                       ||: ..|:|::...::.||          
  Rat   745 LMNLW---AIFCM-----------------------FCL-STYTANLAAVMVGEK---------- 772

  Fly   629 VHSSLKVGMEDILY---NRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVDPNPV---ST 687
            ::..|. |:.|...   ::.:...|....|.|.|.::  |.|...|.....:.|..|:.|   ..
  Rat   773 IYEELS-GIHDPKLHHPSQGFRFGTVRESSAEDYVRQ--SFPEMHEYMRRYNVPATPDGVQYLKN 834

  Fly   688 DPAKSYRDIVHSHETGAHAKDNAASNW---LDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQDI 749
            ||.|          ..|...|.|..::   :|.:..||. :|..|.::   .|.|          
  Rat   835 DPEK----------LDAFIMDKALLDYEVSIDADCKLLT-VGKPFAIE---GYGI---------- 875

  Fly   750 CDLTEVSMFPPQKTVSIMQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPCVKK--IETSD 812
                   ..||         |||:...||..:.:....|.:....:.|: :..||.|:  ..|..
  Rat   876 -------GLPP---------NSPLTSNISELISQYKSHGFMDVLHDKWY-KVVPCGKRSFAVTET 923

  Fly   813 LHVDMDTVSSALLILLFSYAITLM-ILGTEILYSKWHNRIQLK 854
            |.:.:...|...::|...:.:::: .:|..|::.....||:.|
  Rat   924 LQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVHRLLLPRIKNK 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 24/119 (20%)
Lig_chan 563..828 CDD:278489 51/275 (19%)
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 38/212 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
ANF_receptor 127..469 CDD:279440 34/184 (18%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 92/534 (17%)
Lig_chan 676..942 CDD:278489 72/401 (18%)
PPP2CB binding site 951..987 5/16 (31%)
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350002
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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