DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and gria2b

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_005157361.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:897 Species:Danio rerio


Alignment Length:639 Identity:110/639 - (17%)
Similarity:209/639 - (32%) Gaps:194/639 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 FDVWNPGLNYGGHVNLTEIGSFTPTEGIQLHTWFRTTSTVRRRMDM-----QHARVRCMVVVT-- 319
            ||.:...:||  .||:.|:.|   ...:::..|......|..:.|:     .....:.::|.|  
Zfish   360 FDQYGKRVNY--TVNVMELKS---NGAVKIGYWNEVDKMVVTKSDLFPNDTMGLENKTVIVTTIL 419

  Fly   320 ----------------NKNMTGTLMYYLTHTMSGHIDTMNRFNFNLLM------AVRDMFNWTFV 362
                            |:...|..:     .::..|.....|.:.|.:      ..||       
Zfish   420 EAPYVMLKKNADLFMDNERYEGYCV-----DLAAEIAKHCGFKYQLKIVGDGKYGARD------- 472

  Fly   363 LSRTTSWGYVKNGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRST 427
             :.|..|        :||:|.|:..:.||..||:...|.|.:.||.:....|.....:.:.|:.:
Zfish   473 -AETKIW--------NGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 528

  Fly   428 QKDRIVFLQPFTNDVWILIV----GCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHY 488
            :.....||.|...::|:.||    |..|: :|::...:..||                       
Zfish   529 KPGVFSFLDPLAYEIWMCIVFAYIGVSVV-LFLVSRFSPYEW----------------------- 569

  Fly   489 QQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQ 553
                                          ..|||||.                       :.:.
Zfish   570 ------------------------------HTEEYEDG-----------------------QIQT 581

  Fly   554 KKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK 618
            .::....|:| .|:.|.:|...:||...|...:|||.:......|:..|...|:|::...|.:|:
Zfish   582 NESTNEFGIF-NSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVER 645

  Fly   619 -PKTIKTLSDLV-HSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKITSVPTTKENEADEDEPVD 681
             ...|::..||. .:.:..|..|....:::|..:|    :.|:.|..|.:           :..:
Zfish   646 MVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSK----IALFDKMWTYM-----------KGAE 695

  Fly   682 PNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSE 746
            |:......|:....:..|....|:..::..:.:::                             :
Zfish   696 PSVFVKTTAEGVMRVRKSKGKYAYLLESTMNEYIE-----------------------------Q 731

  Fly   747 QDICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPC-----V 805
            :..||..:|......|...| ..|.|.:|..::..:.::.|.|:|....|.|...|..|     .
Zfish   732 RKPCDTMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGD 796

  Fly   806 KKIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILYSKWHNRIQLKWVGAT 859
            .|.:||.|  .:..|:....||:....:.:::...|..|.   :|.:.|.:..|
Zfish   797 SKEKTSAL--SLSNVAGVFYILVGGLGLAMLVALVEFCYK---SRAEAKRMKVT 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 27/123 (22%)
Lig_chan 563..828 CDD:278489 51/272 (19%)
gria2bXP_005157361.1 PBP1_iGluR_AMPA_GluR2 27..395 CDD:107384 9/39 (23%)
ANF_receptor 55..377 CDD:279440 7/18 (39%)
PBP2_iGluR_AMPA 410..790 CDD:270433 86/522 (16%)
Lig_chan 542..820 CDD:278489 66/401 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591565
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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