DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Grin2b

DIOPT Version :10

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_032197.3 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:236 Identity:48/236 - (20%)
Similarity:79/236 - (33%) Gaps:64/236 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 IGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTGTLMYYLTHTMSGHIDTMNR 344
            :.|..|..|    |..|.|             |.|...:.::|.|.....|:.....|       
Mouse   419 VESVDPLSG----TCMRNT-------------VPCQKRIISENKTDEEPGYIKKCCKG------- 459

  Fly   345 FNFNLLMAVRDMFNWTFVLSRTTSWGYVK--NGRFDGMIGALIRNETDIGGAPIFYWLERHKWID 407
            |..::|..:.....:|:.|...|:..:.|  ||.::||||.::.....:....:....||.:.:|
Mouse   460 FCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVD 524

  Fly   408 VAGRSWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWI------LIVGCGVLTVF----------- 455
            .:.....:....:......|.... .||:||:.|||:      |||....:.||           
Mouse   525 FSVPFIETGISVMVSRSNGTVSPS-AFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRC 588

  Fly   456 ----------------ILWFLTTIEWKLVPHDGSALIKPKG 480
                            .:|.|    |.||.::...:..|||
Mouse   589 LADGREPGGPSFTIGKAIWLL----WGLVFNNSVPVQNPKG 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:473866 28/148 (19%)
Lig_chan 563..828 CDD:459656
Grin2bNP_032197.3 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 48/236 (20%)
NMDAR2_C 840..1482 CDD:463148
Blue background indicates that the domain is not in the aligned region.

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