DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Grid1

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:795 Identity:153/795 - (19%)
Similarity:243/795 - (30%) Gaps:263/795 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 AQSNSEWL----------------EGVLRMEALRQI---------------AVVDLACGAVSRRF 169
            |..:|.|:                ..:.||..:|||               .:..|.|.. ...:
Mouse   249 ASKDSHWVFVNEEISDPEILDLVHSALGRMTVVRQIFPSAKDNQKCMRNNHRISSLLCDP-QEGY 312

  Fly   170 LELASAKMLY--------SEKFHWLLIEDFAWHG-------RTQTAEGSGKRD------------ 207
            |::.....||        :..||..| ||..||.       |..|...:|.|.            
Mouse   313 LQMLQISNLYLYDSVLMLANAFHRKL-EDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITG 376

  Fly   208 -DGEMEEEEPPGQQIQATDDEDLPSIE-SFLGGMNLYMNTELTLAKRMSEAAHYTLFDVWNPGLN 270
             .|.||..|          |...|.:: ..||  ..|..   |..|.|.:.|      .|:....
Mouse   377 LTGVMEFRE----------DSSNPYVQFEILG--TTYSE---TFGKDMRKLA------TWDSEKG 420

  Fly   271 YGGHVNLTEIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTGTLMYYLTHTM 335
            ..|.:....:||  ..:|:.|    :..:.:....           |:..:|:.|....|     
Mouse   421 LNGSLQERPMGS--RLQGLTL----KVVTVLEEPF-----------VMVAENILGQPKRY----- 463

  Fly   336 SGHIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGY---VKNGRFDGMIGALIRNETDIGGAPIF 397
                   ..|:.::|.|:.....:.:.:.:.....|   :.|..::||||.||....|:..:.|.
Mouse   464 -------KGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAIT 521

  Fly   398 YWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIVFL-QPFTNDVWILIVGCGVLTVFILWFLT 461
            ...||...:|.:.|........:.:.|.  :|..|..| .||...||..|               
Mouse   522 ITPERESVVDFSKRYMDYSVGILIKKPE--EKISIFSLFAPFDFAVWACI--------------- 569

  Fly   462 TIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDS 526
                                                 |...|:..|.:.|               
Mouse   570 -------------------------------------AAAIPVVGVLIFV--------------- 582

  Fly   527 TPIDAGTLWQRCYQKLNKY--IKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGR 589
                           ||:.  ::.:.|.|.: |........::....|...|||...|.:.|:.|
Mouse   583 ---------------LNRIQAVRSQSATQPR-PSASATLHSAIWIVYGAFVQQGGESSVNSVAMR 631

  Fly   590 CIVITSLLFSFCIYQFYSASIVGTLL---MEKPKTIKTLSDLVHSSLKVGMEDILYNRDYFLHTK 651
            .::.:..||:..:...|:|::...|.   |:.|  |:|..||   |.::.|.        :...:
Mouse   632 IVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNP--IRTFQDL---SKQLEMS--------YGTVR 683

  Fly   652 DPVSMELYAKKITSVPTTKENEADEDEPVDPNPVSTDP--AKSYRDIVHSHETGAHAKDNAASNW 714
            |....|.:..|.|                  ||:..|.  |:.:|.|  |...||   ||..|| 
Mouse   684 DSAVYEYFRAKGT------------------NPLEQDSTFAELWRTI--SKNGGA---DNCVSN- 724

  Fly   715 LDPETGL--LRHLGFAFHVDVAAA-YKIIAETFSEQDICDLTEVSMFPPQKTVSI-MQKNSPMRK 775
              |..|:  .:...:||..|||.. |..:.:     |.|.:|.:......|...| :|..||.|.
Mouse   725 --PSEGIRKAKKGNYAFLWDVAVVEYAALTD-----DDCSVTVIGNSISSKGYGIALQHGSPYRD 782

  Fly   776 VISYGLRRVTETGILTYHFNVWHSRKPPCVKKIETSDLHVDMDTVSSALLILLFSYAITLMILGT 840
            :.|..:..:.:||.|......|......|       ||.....|.:....:.|.|:|....||..
Mouse   783 LFSQRILELQDTGDLDVLKQKWWPHTGRC-------DLTSHSSTQTEGKSLKLHSFAGVFCILAI 840

  Fly   841 EILYSKWHNRIQLKW 855
            .:|.:.....::|.|
Mouse   841 GLLLACLVAALELWW 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 24/117 (21%)
Lig_chan 563..828 CDD:278489 63/273 (23%)
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 41/211 (19%)
PBP1_iGluR_delta_1 25..423 CDD:107387 38/196 (19%)
PBP2_iGluR_delta_1 436..806 CDD:270448 100/525 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846296
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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