DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and Gria2

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:717 Identity:128/717 - (17%)
Similarity:235/717 - (32%) Gaps:218/717 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 RTQTAEGSGKRDDGE--MEEEEPPGQQIQATDDEDLPSIESFLGGMNLYMNTELTLAKRMSEAAH 258
            |.|..|.|.:.:.|:  .....|.||.::.........:|...|.:....|     .||:    :
Mouse   315 RKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQN-----GKRI----N 370

  Fly   259 YT--LFDVWNPGLNYGGH--------VNLTEIGSFTPTEGIQLHTWFRTTSTVRRRMDMQHARVR 313
            ||  :.::...|....|:        |.|||:.|...|.|::..|                    
Mouse   371 YTINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKT-------------------- 415

  Fly   314 CMVVVTNKNMTGTLMYYLTHTMSGHIDTMNRFNFNLLMAVRDMFNWTFVLSRTTSWGYVKNGRF- 377
              ||||....:..:|....|.|....:....:..:|...:.....:.:.|:      .|.:|:: 
Mouse   416 --VVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLT------IVGDGKYG 472

  Fly   378 ---------DGMIGALIRNETDIGGAPIFYWLERHKWIDVAGRSWSSRPCFIFRHPRSTQKDRIV 433
                     :||:|.|:..:.||..||:...|.|.:.||.:....|.....:.:.|:.::.....
Mouse   473 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFS 537

  Fly   434 FLQPFTNDVWILIV----GCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHYQQQQQQ 494
            ||.|...::|:.||    |..|: :|::...:..||                             
Mouse   538 FLDPLAYEIWMCIVFAYIGVSVV-LFLVSRFSPYEW----------------------------- 572

  Fly   495 EQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQKKAPER 559
                                    ..||:||.                      |:.:..::...
Mouse   573 ------------------------HTEEFEDG----------------------RETQSSESTNE 591

  Fly   560 VGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSFCIYQFYSASIVGTLLMEK-PKTIK 623
            .|:| .|:.|.:|...|||...|...:|||.:......|:..|...|:|::...|.:|: ...|:
Mouse   592 FGIF-NSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 655

  Fly   624 TLSDL-VHSSLKVGMEDILYNRDYFLHTKDPVSMELY-----AKKITSVPTTKENEADEDEPVDP 682
            :..|| ..:.:..|..|....:::|..:|..|..:::     |:....|.||.|..|        
Mouse   656 SAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVA-------- 712

  Fly   683 NPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHLGFAFHVDVAAAYKIIAETFSEQ 747
                        .:..|....|:..::..:.:::                             ::
Mouse   713 ------------RVRKSKGKYAYLLESTMNEYIE-----------------------------QR 736

  Fly   748 DICDLTEVSMFPPQKTVSI-MQKNSPMRKVISYGLRRVTETGILTYHFNVWHSRKPPC-----VK 806
            ..||..:|......|...| ..|.|.:|..::..:.:::|.|:|....|.|...|..|     ..
Mouse   737 KPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKDSGS 801

  Fly   807 KIETSDLHVDMDTVSSALLILLFSYAITLMILGTEILY--------------SKWHNRIQLKWVG 857
            |.:||.|  .:..|:....||:....:.:::...|..|              :...|:.:|...|
Mouse   802 KEKTSAL--SLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKMTLSAATRNKARLSITG 864

  Fly   858 AT 859
            :|
Mouse   865 ST 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 26/127 (20%)
Lig_chan 563..828 CDD:278489 54/277 (19%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 17/91 (19%)
PBP2_iGluR_AMPA 413..794 CDD:270433 90/534 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846551
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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