DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir64a and Grik4

DIOPT Version :10

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:NP_780690.2 Gene:Grik4 / 110637 MGIID:95817 Length:956 Species:Mus musculus


Alignment Length:662 Identity:117/662 - (17%)
Similarity:211/662 - (31%) Gaps:243/662 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 VWNPG---LNY---------GGHVNLT---------------------EIGSFTPTEGIQL---- 291
            :|..|   :||         .||:...                     :||.:...||:.:    
Mouse   340 IWQHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALKILQFTRNGFQQIGQWHVAEGLSMDSRL 404

  Fly   292 ------HTWFRTTSTVRRRMDMQHARVRCMVVVTNKNMTGTLMYYLTH-TMSGHIDTMNRFNFNL 349
                  .:.|.||                 :|||.......||....| .|.|: |....|..::
Mouse   405 YASNISDSLFNTT-----------------LVVTTILENPYLMLKGNHQEMEGN-DRYEGFCVDM 451

  Fly   350 LMAVRDM--FNWTFVLSRTTSWGYVK-NGRFDGMIGALIRNETDIGGAPIFYWLERHKWIDVAGR 411
            |..:.::  ||:...|.....:|..: ||.:.||:|.||..:.|:..|.:....||.|.||.:..
Mouse   452 LKELAEILRFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKP 516

  Fly   412 SWSSRPCFIFRHPRSTQKDRIVFLQPFTNDVWI------LIVGCGVLTVFILWFLTTIEWKLVPH 470
            ..:.....::|.....:.....||.||:..||:      |.|.|   .:|::..||..|| ..||
Mouse   517 FMTLGISILYRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSC---VLFLVARLTPYEW-YSPH 577

  Fly   471 DGSALIKPKGGAPPRHHYQQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLW 535
                                                                     |...|   
Mouse   578 ---------------------------------------------------------PCAQG--- 582

  Fly   536 QRCYQKLNKYIKDRKAKQKKAPERVGLFLESVLFFVGIICQQGLGFSTSFVSGRCIVITSLLFSF 600
             ||...:|:|             .:|   .|:.|.||...|||...:...:|.||:......|:.
Mouse   583 -RCNLLVNQY-------------SLG---NSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTL 630

  Fly   601 CIYQFYSASIVGTLLMEKPKT-IKTLSDLV-HSSLKVGMEDILYNRDYFLHTKDPVSMELYAKKI 663
            .|...|:|::...|.:::.:. |:::.||. .::::.|......:..:|.:::......::    
Mouse   631 IIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRMW---- 691

  Fly   664 TSVPTTKENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKDNAASNWLDPETGLLRHL--G 726
                                           :.::|.:.....|..        |.|:.|.|  .
Mouse   692 -------------------------------NYMYSKQPSVFVKST--------EEGIARVLNSN 717

  Fly   727 FAFHVDVAAAYKIIAETFSE---QDICDLTEV----------------SMFPPQKTVSIMQKNSP 772
            :||         ::..|.:|   |..|:||::                |:|..:..::|:|....
Mouse   718 YAF---------LLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQEN 773

  Fly   773 MRKVISYGLRRVTETGILTYHFNVWHSRKPPCVKKIETSDLHVDMDTVSSALLILLFSYAITLMI 837
            .|..|   |:|           ..|...|  |.|:.:.....:.|:.:....::|:....:.:.:
Mouse   774 NRLEI---LKR-----------KWWEGGK--CPKEEDHRAKGLGMENIGGIFVVLICGLIVAIFM 822

  Fly   838 LGTEILYSKWHN 849
            ...|.|::..|:
Mouse   823 AMLEFLWTLRHS 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:473866 31/122 (25%)
Lig_chan 563..828 CDD:459656 47/287 (16%)
Grik4NP_780690.2 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 10/61 (16%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 97/534 (18%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.