DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir64a and grin2cb

DIOPT Version :9

Sequence 1:NP_647962.1 Gene:Ir64a / 38616 FlyBaseID:FBgn0035604 Length:859 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:643 Identity:123/643 - (19%)
Similarity:215/643 - (33%) Gaps:235/643 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 EIGSFTPTEG--IQLH--TWFRTTSTVRRRMDMQHARV-----RCMVVVTNKN-MTGTLMYYL-- 331
            ::||:   ||  :|:.  .|.|..|.:....|.:|..|     |..|:|.:.: .|||.:...  
Zfish   378 KVGSY---EGGILQMRYPVWPRYGSFLEPVSDNRHLTVATLEERPFVIVESVDPATGTCVRNTVP 439

  Fly   332 -------THTMSGHIDTMNR-----FNFNLLMAVRDMFNWTFVLSRTTSWGY----VKNGR---- 376
                   |.::.||.:...:     |..::|..          ||||..:.|    |.||:    
Zfish   440 CRRQSNRTESIIGHTEPYTKLCCKGFCIDILKK----------LSRTIKFSYDLYLVTNGKHGKM 494

  Fly   377 ----FDGMIGALIRNETDIGGAPIFYWLERHKWID-------------VAGRSWSSRPCFIFRHP 424
                ::||||.:.....|:....:....||.:.:|             ||..:.:..|.      
Zfish   495 VRGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPS------ 553

  Fly   425 RSTQKDRIVFLQPFTNDVWILI-VGCGVLTVFILWFLTTIEWKLVPHDGSALIKPKGGAPPRHHY 488
                    .||:|::..||::: |.|  |||                                  
Zfish   554 --------AFLEPYSPAVWVMMFVMC--LTV---------------------------------- 574

  Fly   489 QQQQQQEQVEAPVRPITAVSVVVSKEKVEEKQEEYEDSTPIDAGTLWQRCYQKLNKYIKDRKAKQ 553
                            .||:|.|           :|..:|:.                .:|....
Zfish   575 ----------------VAVTVFV-----------FEYFSPVG----------------YNRSLVS 596

  Fly   554 KKAPE----RVGLFLESVLFFVGIICQQGLGFSTSF-------VSGRCIVITSLLFSFCIYQFYS 607
            .|||.    .:|   :||....||:      |:.|.       .:.:.:|:....|:......|:
Zfish   597 AKAPGGPTFTIG---KSVWLLWGIV------FNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYT 652

  Fly   608 ASIVGTLLMEKPKTIKTLSDLVHSSLKVGMEDILYNRDYFLHTKDPVSMELYAK-KITSVP--TT 669
            |::...::.|  :.|.|:|         |:.|..:.:          ..|.|.. :..:||  :|
Zfish   653 ANLAAFMIQE--QYIDTVS---------GLSDKKFQK----------PQEHYPPFRFGTVPNGST 696

  Fly   670 KENEADEDEPVDPNPVSTDPAKSYRDIVHSHETGAHAKD-NAASNWLDPETGLLRHLGFAFHVDV 733
            :.|                ...:|.| :|:|....:.|. ..|.|.|  :||.|.    ||..|.
Zfish   697 ERN----------------IRSNYPD-MHTHMIKYNQKGVEEALNSL--KTGKLD----AFIYDA 738

  Fly   734 AAAYKIIAETFSEQDICDLTEV---SMFPPQKTVSIMQKNSPMRKVISYGLRRVTETGILTYHFN 795
            |    ::.....:.:.|.|..:   .:|........:||:|..::.|...|.:....|.......
Zfish   739 A----VLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDLALLQFLGDGDTQRLET 799

  Fly   796 VWHSRKPPCV-KKIETSDLHVDMDTVSSALLILLFSYAITLMILGTE-ILYSKWHNRI 851
            ||.|  ..|. :|.|.....:|:|.::....:||.:..::|::...| :||.|..:.:
Zfish   800 VWLS--GICQNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLLYWKLRHSV 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir64aNP_647962.1 Periplasmic_Binding_Protein_Type_2 351..>465 CDD:304360 29/139 (21%)
Lig_chan 563..828 CDD:278489 54/279 (19%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 6/20 (30%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 103/562 (18%)
NMDAR2_C 845..>932 CDD:313729 3/11 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591555
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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