DRSC/TRiP Functional Genomics Resources

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Protein Alignment Membrin and Gosr2

DIOPT Version :9

Sequence 1:NP_647960.1 Gene:Membrin / 38614 FlyBaseID:FBgn0260856 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_113873.1 Gene:Gosr2 / 64154 RGDID:62079 Length:212 Species:Rattus norvegicus


Alignment Length:214 Identity:92/214 - (42%)
Similarity:139/214 - (64%) Gaps:3/214 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MESLYHQTNNVVKDIERDFQRLSQLSAQESLDVENGIQLKITQANANCDRLDVLLYKVPPSQRQS 65
            ||.||.||:..|.:|:....||.....|....|||.||..|.|..::.:||::|..|.||::||:
  Rat     1 MEPLYQQTHKQVHEIQSHMGRLETADKQSVHLVENEIQASIDQIFSHLERLEILSSKEPPNRRQN 65

  Fly    66 SKLRVDQLKYDLRHLQTSLQTARERRQRRMQEISEREQLLNHRFTANSAQPEETRLQLDYELQHH 130
            :||||||||||::||||:|:..:.|||.:.|:..:|::||:..||.|.:   :|.:.:|..||.:
  Rat    66 AKLRVDQLKYDVQHLQTALRNFQHRRQAKEQQERQRDELLSRTFTTNDS---DTTIPMDESLQFN 127

  Fly   131 TQLGNAHRGVDDMIASGSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRI 195
            :.|.|.|.|:||:|..|..|||.|.:||:||.|..|:|..|.:.|||||..|:|||:|..:|:..
  Rat   128 SSLQNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYF 192

  Fly   196 FIGGVVVTLLIIALIIYFL 214
            .|||:::|..::.|::.:|
  Rat   193 MIGGMLLTCAVMFLVVQYL 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MembrinNP_647960.1 SNARE_GS27 124..188 CDD:277216 32/63 (51%)
Gosr2NP_113873.1 IxM motif, signal for cargo packaging into COPII-coated vesicles. /evidence=ECO:0000250|UniProtKB:O14653 118..120 0/1 (0%)
SNARE_GS27 120..185 CDD:277216 32/64 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I6938
eggNOG 1 0.900 - - E1_KOG3251
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37907
Inparanoid 1 1.050 176 1.000 Inparanoid score I3948
OMA 1 1.010 - - QHG55230
OrthoDB 1 1.010 - - D1139640at2759
OrthoFinder 1 1.000 - - FOG0003803
OrthoInspector 1 1.000 - - oto98347
orthoMCL 1 0.900 - - OOG6_102735
Panther 1 1.100 - - LDO PTHR21230
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4845
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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