DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyt-c1 and AT3G27240

DIOPT Version :9

Sequence 1:NP_001246637.1 Gene:Cyt-c1 / 38612 FlyBaseID:FBgn0035600 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_189360.1 Gene:AT3G27240 / 822343 AraportID:AT3G27240 Length:307 Species:Arabidopsis thaliana


Alignment Length:297 Identity:150/297 - (50%)
Similarity:198/297 - (66%) Gaps:8/297 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RRFHGLRLLKSAPALSLQQAKNL-SSAGSWASGNKKLIGALGAITGGVGALIYALEQSVQASGGE 69
            |:.|...|  :.|.||...:|.. ..|||  ||.:.| ..|||  |..|.|.::...|...:...
plant    13 RKLHSQSL--ATPVLSWFSSKKAHEDAGS--SGVRAL-ALLGA--GVTGLLSFSTVASADEAEHG 70

  Fly    70 VHSPAQLWNHKGLFDALDHQSVRRGYEVYKQVCSACHSMQYIAYRNLVGVTHTEAEAKAEAEQIT 134
            :.||...|.|.|:..:.||.|:|||::||:|||::||||..|:||:||||.:||.||||.|.:|.
plant    71 LESPEYPWPHDGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIE 135

  Fly   135 VKDGPDDTGNYYTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTGY 199
            |.|||:|.|..:||||||||.||.||.||.|||.||.||||||||.|..||..|.:|:|:|||||
plant   136 VVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGPNYVFALLTGY 200

  Fly   200 HDAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQSQLAKDVATFLKWTSEPEHD 264
            .|.|||:.:|||.::|||||||||:|.::|.:|.:|||||.|.|::|:.||:.:||.|.:|||.:
plant   201 RDPPAGISIREGLHYNPYFPGGAIAMPKMLNDEAVEYEDGVPATEAQMGKDIVSFLAWAAEPEME 265

  Fly   265 DRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKIV 301
            :||.:..|.|.:|....:.:.|.:|.|||.|||||:|
plant   266 ERKLMGFKWIFLLSLALLQAAYYRRLKWSVLKSRKLV 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyt-c1NP_001246637.1 CYT1 69..296 CDD:225413 124/226 (55%)
Cytochrom_C1 77..295 CDD:280350 122/217 (56%)
AT3G27240NP_189360.1 Cytochrom_C1 78..294 CDD:396646 120/215 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 272 1.000 Domainoid score I433
eggNOG 1 0.900 - - E1_COG2857
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55617
Inparanoid 1 1.050 290 1.000 Inparanoid score I832
OMA 1 1.010 - - QHG54185
OrthoDB 1 1.010 - - D923710at2759
OrthoFinder 1 1.000 - - FOG0003553
OrthoInspector 1 1.000 - - mtm1168
orthoMCL 1 0.900 - - OOG6_102032
Panther 1 1.100 - - LDO PTHR10266
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2430
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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