DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyt-c1 and Cyc1

DIOPT Version :9

Sequence 1:NP_001246637.1 Gene:Cyt-c1 / 38612 FlyBaseID:FBgn0035600 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_001264123.1 Gene:Cyc1 / 300047 RGDID:1306597 Length:326 Species:Rattus norvegicus


Alignment Length:319 Identity:185/319 - (57%)
Similarity:230/319 - (72%) Gaps:16/319 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AATLRRF----HGLRLL-KSAPA-----------LSLQQAKNLSSAGSWASGNKKLIGALGAITG 50
            ||:|||.    .|:.|. .|||.           |...||.:|||....:.|.|.::.|||.:..
  Rat     6 AASLRRSVLGPRGMGLPGASAPGLLGGARPRHLPLRTPQAVSLSSKSGPSRGRKVMLSALGMLAA 70

  Fly    51 GVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQVCSACHSMQYIAYRN 115
            |...|..||..:|.||..|:|.|:..|:|:||..:|||.|:|||::|||||||:||||.|:|||:
  Rat    71 GGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRH 135

  Fly   116 LVGVTHTEAEAKAEAEQITVKDGPDDTGNYYTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSY 180
            ||||.:||.||||.||::.|:|||::.||.:.||||||||||.||||.||||||||||.||||||
  Rat   136 LVGVCYTEEEAKALAEEVEVQDGPNEDGNMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 200

  Fly   181 IVSARKGGEDYIFSLLTGYHDAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQS 245
            ||.||.|||||:|||||||.:.|.||.||||.||||||||.||.||..:|.||:||:||||.|.|
  Rat   201 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMS 265

  Fly   246 QLAKDVATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKIVFVP 304
            |:||||||||:|.||||||.||::.:|::.::|.|..::|.:||||||.|||||:.:.|
  Rat   266 QVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKLAYRP 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyt-c1NP_001246637.1 CYT1 69..296 CDD:225413 151/226 (67%)
Cytochrom_C1 77..295 CDD:280350 148/217 (68%)
Cyc1NP_001264123.1 CYT1 85..288 CDD:225413 142/202 (70%)
Cytochrom_C1 97..315 CDD:280350 148/217 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348892
Domainoid 1 1.000 327 1.000 Domainoid score I1146
eggNOG 1 0.900 - - E1_COG2857
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55617
Inparanoid 1 1.050 371 1.000 Inparanoid score I2059
OMA 1 1.010 - - QHG54185
OrthoDB 1 1.010 - - D439021at33208
OrthoFinder 1 1.000 - - FOG0003553
OrthoInspector 1 1.000 - - otm45968
orthoMCL 1 0.900 - - OOG6_102032
Panther 1 1.100 - - LDO PTHR10266
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2430
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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