DRSC/TRiP Functional Genomics Resources

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Protein Alignment lama and plbd1b

DIOPT Version :9

Sequence 1:NP_001261440.1 Gene:lama / 38610 FlyBaseID:FBgn0016031 Length:658 Species:Drosophila melanogaster
Sequence 2:XP_001332546.5 Gene:plbd1b / 792904 ZFINID:ZDB-GENE-130531-47 Length:576 Species:Danio rerio


Alignment Length:671 Identity:150/671 - (22%)
Similarity:258/671 - (38%) Gaps:221/671 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LLVIGAFFI--GYMERPEYDGTYCATALW---TKQVGFQIENWKQQNDLVNIPTGVGRICYKDSV 83
            |.|:.|.|:  .:::|        ||..|   .:.|..:.:..::..|....        :.||:
Zfish    12 LCVLAATFVMAQHVQR--------ATVYWDAVQRSVVLKEDVMEENGDAFGY--------FNDSL 60

  Fly    84 YENGWAQIEV-----ETQRTYPDWVQAYAAGMLEGSLTWRNIYNQWSNTISSSCERDESTQK--F 141
            ..:||..:||     |:|..  |.|..:.||.|||.||...:.|.:.| :.....:|.|..|  .
Zfish    61 SVSGWGVLEVQAGYGESQEN--DEVTYFLAGYLEGYLTASQMINHYFN-MYPQIIKDRSVLKPLK 122

  Fly   142 C------GWLRDLLTTNYHRLKRQTEKAENDHYWHQLHLFITQLEGLETGYKRGA-SRARSDLEE 199
            |      .|.|..:..|          .::|..||.:.|.:.|::||..|.:..| ||.:.    
Zfish   123 CFMSEQNSWTRAQVKLN----------GKSDPLWHHVGLLVAQMDGLHAGAEFWAKSRQKK---- 173

  Fly   200 EIPFSDFL--LMNAAADIQDLKIYYENYELQNSTEHTEEPGTDQPKNFFLPSATMLTKIVQEEES 262
              |.|.|.  |:|...|:.||....:.:  .||::          .:|.:|..:..:.::  :..
Zfish   174 --PLSMFAVQLLNGIGDLLDLIPVLKRH--SNSSQ----------DSFRMPGMSHCSALI--KML 222

  Fly   263 PQVLQLLFGHSTAGSYSSMLRIQKRYKFHYHFSSKLRSNTVPGVDITFTGYPGILGSTDDFYTIK 327
            |....||.|||:..:|::.:||.|      |::.|.:.|.:.  .::|:.|||.|.|.||||.: 
Zfish   223 PGYENLLLGHSSWYTYAASMRIYK------HWNLKRKCNGIR--RLSFSSYPGTLSSMDDFYLL- 278

  Fly   328 GRHLHAIVGGVGI-----KNE--NLQLWKTVDPKKMVPLVARVMAANRISQNRQTWASAMSRH-P 384
                     |.|.     .|.  |..|:..|.||.::.. .||.||:.::...:.||...|:| .
Zfish   279 ---------GTGFFVTQTTNNVFNTSLFSLVTPKALLAW-QRVRAAHSLACTGKQWAQIFSKHNS 333

  Fly   385 FTGAKQWITVDLNKMKVQDNLYNVLEGDDKHDDAPVVLNEKDRTAIQQRHDQLRDMVW---IAEQ 446
            .|...|::.|||.::.:                                ..|:.|  |   :.||
Zfish   334 GTYNSQYMVVDLKRISL--------------------------------GRQIED--WSLTVVEQ 364

  Fly   447 LPGMMTKKD----VTQGFLVPGNTSWLANGVPYFKNVLELSGV---------NYSED----QQLT 494
            :||::...|    :.||:       |.:..:|:..::.:.||.         ::|.|    .::.
Zfish   365 IPGLVVFSDQSQALRQGY-------WASYNIPFHSDIYQASGYGVMWKKHGQDFSYDLSPRAKIF 422

  Fly   495 VADEEELTSLASVDKYLRTHGFRGDLLGSQ---ESIAYGNIDLKL------FSYNARLGISDF-- 548
            ..|:.::|||.::...:|.:.:|.|....:   :||...| ||:|      ..|:.:  ::|:  
Zfish   423 RRDQGKVTSLETLKDIMRYNDYRKDPYSKKHPCKSICCRN-DLRLRRPHPGGCYDTK--VADYRM 484

  Fly   549 ------HAFAGPV---------FLRFQHTQ----PRT--------------LEDEGQDGGVPPAA 580
                  .|..||.         :.||..|.    |:|              ..|:.:        
Zfish   485 AQMFTAEAVNGPTSQNGLPLFSWSRFNRTAHQGLPQTYNFTFITMQPLLFAFRDQAK-------- 541

  Fly   581 SMGDER-----LSVSIEDADS 596
               .||     ::.|:||.||
Zfish   542 ---TERCLVQCMTSSVEDTDS 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lamaNP_001261440.1 Phospholip_B 19..654 CDD:282734 150/671 (22%)
plbd1bXP_001332546.5 Phospholip_B 12..529 CDD:309859 142/628 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594641
Domainoid 1 1.000 174 1.000 Domainoid score I3618
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 174 1.000 Inparanoid score I4062
OMA 1 1.010 - - QHG54246
OrthoDB 1 1.010 - - D167631at33208
OrthoFinder 1 1.000 - - FOG0002308
OrthoInspector 1 1.000 - - otm25492
orthoMCL 1 0.900 - - OOG6_101392
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.860

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