DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KRT14 and LamC

DIOPT Version :9

Sequence 1:NP_000517.3 Gene:KRT14 / 3861 HGNCID:6416 Length:472 Species:Homo sapiens
Sequence 2:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster


Alignment Length:415 Identity:127/415 - (30%)
Similarity:195/415 - (46%) Gaps:96/415 - (23%)


- Green bases have known domain annotations that are detailed below.


Human   115 EKVTMQNLNDRLASYLDKVRALEEANADLEVKI---RDWYQRQRPAEIKDYSPYFKTIEDLRNKI 176
            ||..:|:||||||.|:|::|.||..|:.|..::   :|...|: .:.:|  :.|.|.:...| |:
  Fly    46 EKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRE-TSNLK--AVYEKELAAAR-KL 106

Human   177 LTATVDNANVLLQIDNARLAAD--------DFRTKYET--ELNLRMSVEA--DING--------- 220
            |..|. .....|:||..||..:        |.:||..|  |.|.|:....  ::||         
  Fly   107 LDETA-KEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADR 170

Human   221 ----------------LRRVLDEL-------TLARADLEMQIESLKEELAYLKKNHEEEMNALR- 261
                            |||.||:|       ||||.|||.|.:||:||||:..:.|.:|:...| 
  Fly   171 KKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRS 235

Human   262 ------GQVGGDVNVEMDAAPGVDLSRILNEMRDQYEKMAEKNRKDAEEWFFTKTEEL----NRE 316
                  .::.|.::.:.:|    .|.:.|.|:|||||.....||::.|..:..:.:.|    ||.
  Fly   236 RRQIEISEIDGRLSRQYEA----KLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRA 296

Human   317 V---ATNSELVQSGKSEISELRRTMQNLEIELQSQLSMK-ASLENSLEETKGRYCMQLAQIQEMI 377
            .   |..:|.|:..:::|..|...:|||| :..:.|:.: ..|||.|:..:.|:       .:.|
  Fly   297 AQGSALATEEVRLMRTKIDGLNAKLQNLE-DTNAGLNARIRELENLLDTERQRH-------NQYI 353

Human   378 GSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEGEDAHL---------------S 427
            .|:|.:|.::|.||..|.|||:.|:|:|..|:.|||.|.:||.||:..|               |
  Fly   354 ASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPTTDSGISS 418

Human   428 SSQFSSGSQSSRD--VTSSSRQIRT 450
            :....:.|.|||.  ||.|.|:..|
  Fly   419 NGSHLTASASSRSGRVTPSGRRSAT 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KRT14NP_000517.3 Head 1..114
Filament 114..425 CDD:306535 116/371 (31%)
Coil 1A 115..150 16/37 (43%)
Linker 1 151..168 3/16 (19%)
Coil 1B 169..260 40/134 (30%)
Linker 12 261..283 4/28 (14%)
Coil 2 284..422 49/145 (34%)
Tail 423..472 11/45 (24%)
Interaction with Type I keratins and keratin filaments 425..472 11/43 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 426..472 11/42 (26%)
LamCNP_001260974.1 Filament 45..401 CDD:278467 116/371 (31%)
ATP-synt_B <67..>142 CDD:304375 21/79 (27%)
MreC <178..>224 CDD:302802 20/45 (44%)
LTD 473..574 CDD:279300
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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