DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4669 and ms(3)76Cc

DIOPT Version :10

Sequence 1:NP_647956.2 Gene:CG4669 / 38608 FlyBaseID:FBgn0035598 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_649136.1 Gene:ms(3)76Cc / 40142 FlyBaseID:FBgn0036895 Length:1174 Species:Drosophila melanogaster


Alignment Length:555 Identity:231/555 - (41%)
Similarity:333/555 - (60%) Gaps:32/555 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 KGCTRM-RRNDIDR-SLGYPIGVVSGTTVVKSGI---PNQES---VRFASNLKAFAHSYYTRRDE 125
            |.|.:: .|:|::. |||.|:|:|.....|.:..   |.|:.   :.||:.|||||..|.....:
  Fly    58 KFCEKVPNRSDVEADSLGCPVGLVCSNATVNNPCGCSPKQQEANVLNFATYLKAFALIYVLPETD 122

  Fly   126 WKPDTIDMVVNEGQVLFNDSENM----DPPNASD--SPDIYDENEQKVTRHFKINDIEFAMELEA 184
            |..:.|||::.||..||..|.::    |.|:...  .|:||...|:::.|:|.:....|.:.||.
  Fly   123 WTAEKIDMLLEEGTDLFRASSDVNQGHDDPDEHKLLEPEIYTNEEKRIKRNFNLEGHTFTLALEP 187

  Fly   185 PFEVYGYE-------NVIRNLRRILRAFFKKAKYGVFFTPNWYLLIWKEKGVWMVLDLNGRDKNT 242
            .:...|.:       ::|:||..||::|||.::|.:..|...:||||:.:.|:.|||:.||.|:.
  Fly   188 RYLGVGSKPLDQQPPHIIKNLGTILQSFFKSSRYCLLLTRVGHLLIWRRRRVFFVLDVKGRAKDD 252

  Fly   243 MKPNNEEGYPLLLGLKSFDNVVWLIKKESYLDKNAKFSIREILVVRLATPGSTGQSWEREHGMRM 307
            :....:.|..:|:.|||.||||.|....|.:....:|||||::||||.||  .|:.:.|:...|.
  Fly   253 LATVKDNGVAMLVCLKSIDNVVHLASNLSGISPRDEFSIRELVVVRLETP--DGRIYMRDTSHRS 315

  Fly   308 SQFDVIASDYAYVKSNLHLTLNSKDALRNRSALPVAVATALASKIDHPATWDQKMYDKVMCYGVN 372
            .:|.|:...|||:|..|||:||..|.:||||:|.|||.:.|||||||||.||..|.|:::.|||.
  Fly   316 IEFKVVNKSYAYLKGTLHLSLNKDDPVRNRSSLMVAVGSVLASKIDHPANWDTNMLDRLISYGVE 380

  Fly   373 MCKNCWEPCMDPSKPMDLDDFPRQIRLGQFVAEIMLTPNAYEGWWKCVPMYKFNDFHLMLEKALD 437
            :|::||..|:...:|:|||.||.|:|:||||.|:.|.||...|.|:|.......||...:.:||.
  Fly   381 LCRSCWSDCLRDRRPIDLDTFPTQLRMGQFVLELKLIPNVRTGHWRCGVRIIGTDFEAHVSQALK 445

  Fly   438 QNDYIIFQINNQMYSLWKKSDFIYLMDPYRHNIVGRILEE--GEDPKSATVRMFGNMDRLLSVFH 500
            :...::||||||||::|.|..|.||:|||||.|||..:.|  .|..|.||||||.:...:|||||
  Fly   446 ELGNVVFQINNQMYAIWLKDGFYYLVDPYRHTIVGTHVAEDKAEGAKWATVRMFRDQLTMLSVFH 510

  Fly   501 QILLESNRSAVFHIHTLRIRNITECPPGTAPALLP-PD--EDVEVRSLNENIRFDEN--YDKCLQ 560
            |:|.||||.:.:::|.:||||:.|||.|.  |||| ||  :..||:||||.|.|:|.  ...|.:
  Fly   511 QLLKESNRQSAYYVHVVRIRNLAECPEGY--ALLPMPDGKDSCEVKSLNETIFFNEQQCVRVCNK 573

  Fly   561 ELGEISDFEEDLVSEIEPIVEISSSEEMVEEEEGG 595
            .|.||||:|||:||.:....:|...:.:.|::.||
  Fly   574 SLAEISDYEEDVVSLLTDKSDIDHFQVLDEQQNGG 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4669NP_647956.2 None
ms(3)76CcNP_649136.1 PTZ00449 <656..897 CDD:185628
Blue background indicates that the domain is not in the aligned region.

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