DRSC/TRiP Functional Genomics Resources

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Protein Alignment shep and PAB1

DIOPT Version :9

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_011092.1 Gene:PAB1 / 856912 SGDID:S000000967 Length:577 Species:Saccharomyces cerevisiae


Alignment Length:506 Identity:112/506 - (22%)
Similarity:166/506 - (32%) Gaps:180/506 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 AASPSNTNSSSSSNTGSQSGTLSTSLSNT--------------------TNTNTNMGPNGTVQNQ 232
            ||:.|.:.|..:|:.....|.|..|:|..                    ..|.|::|......|.
Yeast    24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88

  Fly   233 NQQGG---EQLSKT------------------------NLYIRGLQQGTTDKDLVNMCAQYGTII 270
            ::.|.   |||:.|                        |::|:.|.....:|.|.:..:.:|.|:
Yeast    89 HEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153

  Fly   271 STKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG---KGVQAQMA---KQQEQDP-------- 321
            |:|...|: ..|.||:|||.||:...|:.|:..|.|   .|.:..:|   .::|:|.        
Yeast   154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAH 217

  Fly   322 -TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGN 385
             ||||:.|:.....:...:.:.:|:|.:||..:.:|.....||.||...|..|...:.::..|.:
Yeast   218 YTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDS 282

  Fly   386 TIPGAKDPLLVKFADGGPKKK-------------------------NLF-KTPDPNARAWRDVSA 424
            .:.|.|  |.|    |..:||                         ||| |..|.:      |..
Yeast   283 ELNGEK--LYV----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDS------VDD 335

  Fly   425 EGIPVAYDP---------TMQQNGVSVNVGTPIGVPYSRFSAPQ-------------VGGYP--- 464
            |.:...:.|         ...:||.|...|      :..||.|:             |.|.|   
Yeast   336 EKLEEEFAPYGTITSAKVMRTENGKSKGFG------FVCFSTPEEATKAITEKNQQIVAGKPLYV 394

  Fly   465 -------VAGSQWIPGYMMTQVDDQTSYSPQYMQMAAA-----------------PPLGVTSYKP 505
                   |..||..   ...|..:|..|.......|||                 ||.||....|
Yeast   395 AIAQRKDVRRSQLA---QQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGP 456

  Fly   506 EAVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPP 556
            .. .|:.|.|         |:|...|.||..           ..|.|..||
Yeast   457 NP-QQMNPMG---------GMPKNGMPPQFR-----------NGPVYGVPP 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 24/96 (25%)
RRM2_MSSP 322..400 CDD:240690 21/77 (27%)
PAB1NP_011092.1 PABP-1234 38..559 CDD:130689 107/492 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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