Protein Alignment shep and PAB8

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_001185184.1
• Gene: PAB8 / 841399
• AraportID: AT1G49760
• Length: 671
• Species: Arabidopsis thaliana
• Alignment Length: 634
• Identity: 142/634 - (22%)
• Similarity: 215/634 - (33%)
• Gaps: 167/634 - (26%)

  Fly    83 VALKGALPQRPPAMTSPAAAAAG-AALAAGAPYRGAASWTP-------------QGYAPAAAAAA 133
            ||:.||      |....|||||| ||.||||..:|..|...             :.:..|....:
plant    15 VAVPGA------AAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVS 73

  Fly   134 AAVAQQAAYRYTAPLPQPAYAAYTPHTATTPATTTVSFLSQPVDYYWYGQ--RVPTAASPSNTNS 196
            ..|.:....|.:.......||  ||..|:. |...::|::      ..|:  ||..:....:...
plant    74 VRVCRDMTTRRSLGYGYVNYA--TPQDASR-ALNELNFMA------LNGRAIRVMYSVRDPSLRK 129

  Fly   197 SSSSNTGSQSGTLSTSLSNTTNTNTNMGP-----------------------------------N 226
            |...|...::...|........|.:..||                                   |
plant   130 SGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194

  Fly   227 GTVQN-------------QNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDK 278
            |.:.|             |....||::..||:|::.|.:..:|::|..:..::| :.::..|:..
plant   195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRD 258

  Fly   279 TTNKCKGYGFVDFEQPAFAECAVKGLQGKGV--------QAQMAKQQEQD--------------- 320
            ...|.||:|||:||....|..||..|.||..        :||...::|.:
plant   259 GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADK 323

  Fly   321 --PTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFN 383
              .:|||:.||.....:..|....:.:|.:.|.:::||....|:|.||....:.|:..:.|...|
plant   324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388

  Fly   384 GNTIPGAKDPLLVKFADGGPKKKNLFKTPDPNAR---AWRDVSAEGIPVAYDPTMQQ-------- 437
            |..|  ...||.|..|.         :..|..||   .:..:....:|.|..|.||.
plant   389 GKMI--VTKPLYVALAQ---------RKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPM 442

  Fly   438 -NGVSVNVGTPIGVPYSRFSAPQ--VGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLG 499
             ..:....|.|..:|...|...|  |.|....||. :|.:.|..: .|.....|..|....|..|
plant   443 GQQLFYGQGPPAMIPQPGFGYQQQLVPGMRPGGSP-MPNFFMPMM-QQGQQQQQQQQQQQRPGGG 505

  Fly   500 VTSYKPEAVNQVQPRGISMMVSGDTGVPYGTM--MPQLATLQIGNSYISPT-----YPY------ 551
            .....|      ||:..|.|:..... |.|.|  .||...    |:...||     .||
plant   506 RRGALP------QPQQPSPMMQQQMH-PRGRMYRYPQRDV----NTMPGPTQNMLSVPYDVSSGG 559

  Fly   552 ---YAPPPTIIPTMPMTDSEQASTAASPDEAYTQ-----YP--HQAAPK 590
               :...||..| :|:.........|:|::..|.     ||  .|..|:
plant   560 GVHHRDSPTSQP-VPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPE 607

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	23/77 (30%)
		RRM2_MSSP	322..400	CDD:240690	22/77 (29%)
PAB8	NP_001185184.1	PABP-1234	46..646	CDD:130689	124/597 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010