DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment shep and AT1G03457

DIOPT Version :9

Sequence 1:	NP_001246636.1	Gene:	shep / 38605	FlyBaseID:	FBgn0052423	Length:	590	Species:	Drosophila melanogaster
Sequence 2:	NP_973752.1	Gene:	AT1G03457 / 839497	AraportID:	AT1G03457	Length:	438	Species:	Arabidopsis thaliana

Alignment Length:	377	Identity:	83/377 - (22%)
Similarity:	145/377 - (38%)	Gaps:	106/377 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly   228 TVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFV--- 289
            |::|:        .:..|::..:.:..|:..|:.:..::..:.....|.:|||...:|..|:
plant     5 TMENE--------ERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61

  Fly   290 ----------DFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPT-----NLYIANLPPHFKETDLE 339
                      .|........|...||.|....::.:....|.:     .|::..||.:..||:::
plant    62 TREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQ 126

  Fly   340 AMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI-PGAKDPLLVKFADGGP 403
            ::.|:||.:...:|||.....|||..|.:.||:|:....::..||..| .||..||:||:||...
plant   127 SLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 191

  Fly   404 KK--KNLFKTP------DPNARAWRDVSAEG-IPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQ 459
            ::  :.|.|..      ||     ::.|..| :|::|.|                 ||:.:
plant   192 ERQARRLLKVQSHVSRLDP-----QNPSMFGALPMSYVP-----------------PYNGY---- 230

  Fly   460 VGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQPRGISMMVSGDT 524
              ||.|.|:.   |||:..:..|.::.                      |.:.|.      .|:.
plant   231 --GYHVPGTY---GYMLPPIQTQHAFH----------------------NVISPN------QGNG 262

  Fly   525 GVPYGTMM-----PQLATLQ-----IGN-SYISPTYPYYAPPPTIIPTMPMT 565
            ....||.:     |:||..:     :|| .|....||...|...|.|.:|:|
plant   263 RALQGTALTESVPPRLAPRRNFPTALGNYGYHGLQYPMAFPRGMIPPRLPLT 314

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	14/82 (17%)
shep	NP_001246636.1	RRM2_MSSP	322..400	CDD:240690	27/83 (33%)
AT1G03457	NP_973752.1	RRM1_2_CELF1-6_like	13..89	CDD:240807	13/75 (17%)
		PABP-1234	<14..346	CDD:130689	81/360 (23%)
		RRM1_2_CELF1-6_like	110..185	CDD:240807	25/74 (34%)
		RRM3_CELF1-6	341..413	CDD:240808
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910