Protein Alignment shep and PAB7

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_181204.1
• Gene: PAB7 / 818238
• AraportID: AT2G36660
• Length: 609
• Species: Arabidopsis thaliana
• Alignment Length: 355
• Identity: 84/355 - (23%)
• Similarity: 139/355 - (39%)
• Gaps: 71/355 - (20%)

  Fly   243 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG- 306
            ||||::.|....::..|....|::|.|:|. ||.......|:||.||:|:.|..|..|.:.:.|
plant   201 TNLYMKNLDADVSEDLLREKFAEFGKIVSL-AIAKDENRLCRGYAFVNFDNPEDARRAAETVNGT 264

  Fly   307 --------------KGVQAQMAKQQEQDP----------TNLYIANLPPHFKETDLEAMLSKYGQ 347
                          |..:.|:.::|.::.          :|:|:.|:.....|.:|....|:.|.
plant   265 KFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGT 329

  Fly   348 VVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP 412
            :.||:::.|::..|||.||....:.|:....::.|:|....|  .||.|..|.....:|...:..
plant   330 ITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG--KPLYVAIAQKKEDRKMQLQVQ 392

  Fly   413 DPN-ARAWRDVSAEGI-PVAYDPTMQQNGVSVNVGTPIGVPYSRF-----SAPQVG-GYPVAGSQ 469
            ..| ..|.:..|:..: |..|.|....|       |..|:.|..:     ||..:| .||.:.:.
plant   393 FGNRVEARKSSSSASVNPGTYAPLYYTN-------THPGMVYQSYPLMWKSANMIGSSYPNSEAV 450

  Fly   470 WIPGYM-----------MTQVD-DQTSYSPQYMQMAAAPPLGVTSYK----------PEAVNQVQ 512
            ..|..:           :.::| :..||.|...|.....||.....|          .|....:|
plant   451 TYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQ 515

  Fly   513 PR-----GISMMVSGDTGVP-YGTMMPQLA 536
            .|     |:.|.:.|:...| ...:.||||
plant   516 QRQSETVGMEMQLLGELLHPLVEKLEPQLA 545

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	23/84 (27%)
		RRM2_MSSP	322..400	CDD:240690	22/77 (29%)
PAB7	NP_181204.1	PABP-1234	24..582	CDD:130689	84/355 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910