Protein Alignment shep and PAB4

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_179916.1
• Gene: PAB4 / 816867
• AraportID: AT2G23350
• Length: 662
• Species: Arabidopsis thaliana
• Alignment Length: 620
• Identity: 128/620 - (20%)
• Similarity: 205/620 - (33%)
• Gaps: 194/620 - (31%)

  Fly    93 PPAMTSPAAAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAA------VAQQAAYRYTAPLPQP 151
            |||:.:..||.|.|....|....|      .|....|..:...      |.....|.|...:.|.
plant    14 PPAVVNDGAATASATPGIGVGGGG------DGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQV 72

  Fly   152 AYAAYTPHTATTPA----------TTTVSFLSQPVDYYWYGQRVPTAASPSNTNSSSSSNTG--- 203
            .........||..:          |.......|.::|.:...::......|..:|:..|..|
plant    73 VSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLF 137

  Fly   204 -----------------SQSGTLSTSLSNTTNTNTNMG------------------PNGTVQNQN 233
                             |..||:.:....|.:...:.|                  .||.|.|..
plant   138 VKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 202

  Fly   234 Q-------------QGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKG 285
            |             ...:::..||:|::.|.:.|||.:|.....|||: ||:..::.....|.:.
plant   203 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGS-ISSAVVMRDGDGKSRC 266

  Fly   286 YGFVDFEQPAFAECAVKGLQGKGV----------------QAQMAKQQEQ---------DPTNLY 325
            :|||:||.|..|..||:.|.||..                :.:::::.||         |..|||
plant   267 FGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLY 331

  Fly   326 IANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGA 390
            :.||.....:..|..:.:::|.:.|.:::||....|||.||....:..:..:::...||..:.|
plant   332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGG- 395

  Fly   391 KDPLLVKFADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRF 455
             .||.|..|....::           ||........:..|:.|     ||...:  ||      |
plant   396 -KPLYVALAQRKEER-----------RAKLQAQFSQMRPAFIP-----GVGPRM--PI------F 435

  Fly   456 SAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPL-----GVTSYKPEAVNQVQPR- 514
            :    ||.|..|.|...|                   ...||:     |. .|:|:.|..::|.
plant   436 T----GGAPGLGQQIFYG-------------------QGPPPIIPHQPGF-GYQPQLVPGMRPAF 476

  Fly   515 -GISMMVSGDTG--------------------VPYGTMMPQLATLQIGNSYISPT----YPYYAP 554
             |..||..|..|                    :||  |.||:  :..|..|..|:    .|....
plant   477 FGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPY--MQPQM--MPRGRGYRYPSGGRNMPDGPM 537

  Fly   555 PPTIIP----------TMPMTDSEQASTAASPDEA 579
            |..::|          :.||:..:.|::.|:...|
plant   538 PGGMVPVAYDMNVMPYSQPMSAGQLATSLANATPA 572

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	26/85 (31%)
		RRM2_MSSP	322..400	CDD:240690	21/77 (27%)
PAB4	NP_179916.1	PABP-1234	47..631	CDD:130689	117/581 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010