DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shep and rbms3

DIOPT Version :9

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_005158285.1 Gene:rbms3 / 767747 ZFINID:ZDB-GENE-060929-244 Length:415 Species:Danio rerio


Alignment Length:475 Identity:182/475 - (38%)
Similarity:226/475 - (47%) Gaps:118/475 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 QQAAYRYTAPLPQPAYAAYTPHTATTPATTTVSFLSQPVDYYWYGQRVPTAASPS-NTNSSSSSN 201
            ||..|        |.|..|.||...|..:              |....|..|.|| :|||||.| 
Zfish     7 QQPMY--------PQYTYYYPHYLQTKQS--------------YAPPPPPMAPPSPSTNSSSHS- 48

  Fly   202 TGSQSGTLSTSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQY 266
                                              ..|||||||||||||..||||:||:.:|..|
Zfish    49 ----------------------------------AAEQLSKTNLYIRGLPPGTTDQDLIKLCQPY 79

  Fly   267 GTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPP 331
            |.|:||||||||.||:|||||||||:.||.|:.||..|:..|||||||||||||||||||:|||.
Zfish    80 GKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKASGVQAQMAKQQEQDPTNLYISNLPV 144

  Fly   332 HFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGN------TIPGA 390
            ...|.:||.||..:|.|:|||||||....|:|||||||||.|||:.:||.|||.      .:|..
Zfish   145 SMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCDVVIQHFNGKFLKTPPGVPAP 209

  Fly   391 KDPLLVKFADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRF 455
            .:|||.||||||.||:........|.|.|......|:.:.||||..|||.              :
Zfish   210 TEPLLCKFADGGQKKRQSQSKYPQNGRPWPREGESGMALTYDPTAMQNGF--------------Y 260

  Fly   456 SAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGV-----TSYKPEAVNQVQPRG 515
            |:|    |.::.::.|.         |||.:|    ..||.|:..     ||:.|.....:||.|
Zfish   261 SSP----YSISTNRMIA---------QTSITP----FIAASPVSTYQVQSTSWMPHQQYVMQPTG 308

  Fly   516 ISMMVSGDTGV---PYGTMMP---QLATLQIG--NSYI----SPTYPYYAPPPTIIPTMP----- 563
            ..:..:.|..:   |...|.|   |:..|.:|  .:|:    :|....|.|..|.:|...     
Zfish   309 AVITPTMDHTISMQPANMMGPLTQQMNHLSLGTTGTYMTAAAAPMQGTYIPQYTAVPASAVSVEG 373

  Fly   564 -MTDSEQASTAASPDEAYTQ 582
             :||:...|..||..:|..|
Zfish   374 VVTDASPQSVPASSQDASGQ 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM1_MSSP 243..313 CDD:240689 47/69 (68%)
RRM2_MSSP 322..400 CDD:240690 46/83 (55%)
rbms3XP_005158285.1 RRM1_RBMS3 52..131 CDD:240916 56/78 (72%)
RRM2_MSSP2 135..220 CDD:240918 47/84 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I7401
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I2939
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001320
OrthoInspector 1 1.000 - - otm24925
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24012
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3067
SonicParanoid 1 1.000 - - X530
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
99.090

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