DRSC/TRiP Functional Genomics Resources

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Protein Alignment shep and pabpc1a

DIOPT Version :10

Sequence 1:NP_001246636.1 Gene:shep / 38605 FlyBaseID:FBgn0052423 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001026846.1 Gene:pabpc1a / 606498 ZFINID:ZDB-GENE-030131-3238 Length:634 Species:Danio rerio


Alignment Length:423 Identity:99/423 - (23%)
Similarity:150/423 - (35%) Gaps:116/423 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 NLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQG-- 306
            |::|:.|.:...:|.|.:..:.:|.|:|.|.:.|:  |..||||||.||....||.|::.:.|  
Zfish   100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGML 162

  Fly   307 --------------KGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 357
                          |..:|:|..:.::. ||:||.|......:..|:.:..|||..:|.|::.|.
Zfish   163 LNDRKVFVGRFKSRKEREAEMGARAKEF-TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226

  Fly   358 QMNSKGVGFARMESREKCEQIIQMFNGNTIPG------------------------AKDPLLVKF 398
            ...|||.||...|..|..::.:...||..:.|                        .|...:.::
Zfish   227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRY 291

  Fly   399 ADGGPKKKNLFKTPDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAP----- 458
            .......|||....| :.|..::.|..|       |:....|.:..|...|..:..||:|     
Zfish   292 QGVNLYVKNLDDGLD-DERLRKEFSPFG-------TITSAKVMMEGGRSKGFGFVCFSSPEEATK 348

  Fly   459 ---QVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAA---------------APPLGVTSYKP 505
               ::.|..||...........:.:.|...:.||||..|               |||.|   |..
Zfish   349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSG---YFM 410

  Fly   506 EAVNQVQPRGISMMVSGDTGVPYGTMMPQLATLQ-----------------IGNSYISPTYPYYA 553
            .|:.|.|.|......|            |||.|:                 :.|:.:.|:.|   
Zfish   411 AAIPQAQNRAAYYPTS------------QLAQLRPSPRWATQGVRPQHFQNMPNAAVRPSAP--- 460

  Fly   554 PPPTIIPTMP-------MTDSEQASTAASPDEA 579
            .|.|..|..|       ||.....|.|..|..|
Zfish   461 RPQTFNPVRPASQVPRMMTSQRMGSQAMGPRPA 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shepNP_001246636.1 RRM_SF 240..321 CDD:473069 26/92 (28%)
RRM2_MSSP 322..400 CDD:409690 23/101 (23%)
pabpc1aNP_001026846.1 PABP-1234 11..614 CDD:130689 99/423 (23%)

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