Protein Alignment shep and Rbms2

DIOPT Version :9

• Sequence 1: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_062685.2
• Gene: Rbms2 / 56516
• MGIID: 1861776
• Length: 383
• Species: Mus musculus
• Alignment Length: 438
• Identity: 184/438 - (42%)
• Similarity: 220/438 - (50%)
• Gaps: 81/438 - (18%)

  Fly   164 PATTTVSFLSQPVDYYWYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTSLSNTTNTNTNMGPNGT 228
            |..:|..:.......|...|..|  .||.|:..:||...|..||
Mouse     9 PGISTFGYNKNNKKLYVAQQMAP--PSPRNSTPNSSGGGGGGSG--------------------- 50

  Fly   229 VQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQ 293
                   |.:|||||||||||||.||||:|||.:|..||.|:|||||||||||||||||||||:.
Mouse    51 -------GNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 108

  Fly   294 PAFAECAVKGLQGKGVQAQMAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQ 358
            |:.|:.||..|:..|||||||||||||||||||:|||....|.:||.||..:|||:|||||||..
Mouse   109 PSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTS 173

  Fly   359 MNSKGVGFARMESREKCEQIIQMFNG---NTIPGA---KDPLLVKFADGGPKKKNLFKTPDPNAR 417
            ..|:|||||||||.||||.||..|||   .|.||.   .||||.|||||||||:........|.|
Mouse   174 GASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQSQGRYVQNGR 238

  Fly   418 AW-RDVSAEGIPVAYDPTMQ-QNGVSVNVGTPIGVPYSRFSAPQ-VGGY---PVA---GSQWIPG 473
            || |:....|:.:.||||.. |||.   ...|..:.:||..|.. :..|   ||:   ||...||
Mouse   239 AWPRNGDMGGMALTYDPTAALQNGF---YAAPYSIAHSRMLAQSALAPYLPSPVSSYQGSVLTPG 300

  Fly   474 YMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQPRGISMMVSGDTGVPYGTMMPQLATL 538
                 :|...|..|..|.......||..|     :|.:                 ||.||..|.:
Mouse   301 -----MDHPLSLQPASMMGPLTQQLGHLS-----LNSL-----------------GTFMPAAAAM 338

  Fly   539 QIGNSYISPTYPYYAPPPTIIPTMPMTDSEQASTAASPDEAYTQYPHQ 586
            .  .:|||    .|...|:...:...::.:|...|..|...:..||.|
Mouse   339 H--GAYIS----QYPAVPSSSVSAEESNGQQNQLAVEPPSDHGVYPFQ 380

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	50/69 (72%)
		RRM2_MSSP	322..400	CDD:240690	51/83 (61%)
Rbms2	NP_062685.2	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	28..56		12/57 (21%)
		RRM_SF	53..136	CDD:388407	62/82 (76%)
		RRM2_MSSP2	137..222	CDD:240918	52/84 (62%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	352..383		6/29 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	95	1.000	Domainoid score	I7388
eggNOG	1	0.900	-	-		E1_KOG4733
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	258	1.000	Inparanoid score	I3125
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001320
OrthoInspector	1	1.000	-	-		otm43950
orthoMCL	1	0.900	-	-		OOG6_110472
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3067
SonicParanoid	1	1.000	-	-		X530
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	13	12.850